Analysis of interatomic Contacts of Structural Units in PDB entry:
3PUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PUJ entry

There are 4 chains in PDB entry 3PUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLU 590
C
 ARG 2GLN 10
B
 ILE 4GLU 591
D
 MET 1GLN 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 3PUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
46 51Right-handed alpha
Helix 5
5
A
80 90Right-handed alpha
Helix 6
6
A
111 120Right-handed alpha
Helix 7
7
A
122 125Right-handed 310
Helix 8
8
A
149 158Right-handed alpha
Helix 9
9
A
159 163Right-handed 310
Helix 10
10
A
164 183Right-handed alpha
Helix 11
11
A
195 216Right-handed alpha
Helix 12
12
A
223 228Right-handed alpha
Helix 13
13
A
236 238Right-handed 310
Helix 14
14
A
240 244Right-handed 310
Helix 15
15
A
248 257Right-handed alpha
Helix 16
16
A
285 292Right-handed alpha
Helix 17
17
A
297 311Right-handed alpha
Helix 18
18
A
312 314Right-handed 310
Helix 19
19
A
326 333Right-handed alpha
Helix 20
20
A
333 358Right-handed alpha
Helix 21
21
A
360 375Right-handed alpha
Helix 22
22
A
385 396Right-handed alpha
Helix 23
23
A
400 415Right-handed alpha
Helix 24
24
A
419 431Right-handed alpha
Helix 25
25
A
433 443Right-handed alpha
Helix 26
26
A
444 447Right-handed 310
Helix 27
27
A
480 491Right-handed alpha
Helix 28
28
A
547 561Right-handed alpha
Helix 29
29
A
574 584Right-handed alpha
Helix 30
30
C
4 10Right-handed alpha
Helix 31
31
B
5 18Right-handed alpha
Helix 32
32
B
18 23Right-handed alpha
Helix 33
33
B
34 45Right-handed alpha
Helix 34
34
B
46 53Right-handed alpha
Helix 35
35
B
80 93Right-handed alpha
Helix 36
36
B
111 120Right-handed alpha
Helix 37
37
B
122 125Right-handed 310
Helix 38
38
B
153 158Right-handed alpha
Helix 39
39
B
161 163Right-handed 310
Helix 40
40
B
164 183Right-handed alpha
Helix 41
41
B
195 216Right-handed alpha
Helix 42
42
B
222 228Right-handed alpha
Helix 43
43
B
236 238Right-handed 310
Helix 44
44
B
240 244Right-handed 310
Helix 45
45
B
248 257Right-handed alpha
Helix 46
46
B
285 292Right-handed alpha
Helix 47
47
B
298 314Right-handed alpha
Helix 48
48
B
323 333Right-handed alpha
Helix 49
49
B
333 359Right-handed alpha
Helix 50
50
B
362 375Right-handed alpha
Helix 51
51
B
385 396Right-handed alpha
Helix 52
52
B
400 416Right-handed alpha
Helix 53
53
B
419 429Right-handed alpha
Helix 54
54
B
433 443Right-handed alpha
Helix 55
55
B
444 447Right-handed 310
Helix 56
56
B
480 491Right-handed alpha
Helix 57
57
B
547 561Right-handed alpha
Helix 58
58
B
574 583Right-handed alpha
Helix 59
59
D
4 9Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3PUJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
29 33parallel
Strand 3
A
72 77parallel
Strand 4
A
102 106parallel
Strand 5
A
127 132parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
564 569parallel
Strand 4
A
536 542parallel
Strand 5
A
229 234parallel
Strand 6
A
188 191parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
572 573parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
29 33parallel
Strand 3
B
73 77parallel
Strand 4
B
102 106parallel
Strand 5
B
127 132parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
144 146anti-parallel
Strand 3
B
564 569parallel
Strand 4
B
536 542parallel
Strand 5
B
229 234parallel
Strand 6
B
188 191parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 546first strand
Strand 2
B
572 573parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il