Analysis of interatomic Contacts of Structural Units in PDB entry:
3PUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PUQ entry

There are 2 chains in PDB entry 3PUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 191LYS 706
C
 PRO 192LYS 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3PUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
254 256Right-handed 310
Helix 2
2
A
259 263Right-handed 310
Helix 3
3
A
274 279Right-handed alpha
Helix 4
4
A
296 300Right-handed 310
Helix 5
5
A
308 319Right-handed alpha
Helix 6
6
A
320 322Right-handed 310
Helix 7
7
A
336 346Right-handed alpha
Helix 8
8
A
347 352Right-handed 310
Helix 9
9
A
374 383Right-handed alpha
Helix 10
10
A
403 411Right-handed alpha
Helix 11
11
A
432 437Right-handed alpha
Helix 12
12
A
440 447Right-handed alpha
Helix 13
13
A
447 453Right-handed alpha
Helix 14
14
A
472 476Right-handed 310
Helix 15
15
A
497 501Right-handed 310
Helix 16
16
A
520 533Right-handed alpha
Helix 17
17
A
539 544Right-handed 310
Helix 18
18
A
584 586Right-handed 310
Helix 19
19
A
587 605Right-handed alpha
Helix 20
20
A
615 627Right-handed alpha
Helix 21
21
A
627 638Right-handed alpha
Helix 22
22
A
646 671Right-handed alpha
Helix 23
23
A
679 703Right-handed alpha
Helix 24
24
C
254 256Right-handed 310
Helix 25
25
C
259 263Right-handed 310
Helix 26
26
C
274 279Right-handed alpha
Helix 27
27
C
296 300Right-handed 310
Helix 28
28
C
308 319Right-handed alpha
Helix 29
29
C
320 322Right-handed 310
Helix 30
30
C
336 346Right-handed alpha
Helix 31
31
C
347 352Right-handed 310
Helix 32
32
C
374 383Right-handed alpha
Helix 33
33
C
403 412Right-handed alpha
Helix 34
34
C
432 436Right-handed 310
Helix 35
35
C
440 447Right-handed alpha
Helix 36
36
C
447 453Right-handed alpha
Helix 37
37
C
472 476Right-handed 310
Helix 38
38
C
497 501Right-handed 310
Helix 39
39
C
520 533Right-handed alpha
Helix 40
40
C
539 543Right-handed 310
Helix 41
41
C
584 586Right-handed 310
Helix 42
42
C
587 605Right-handed alpha
Helix 43
43
C
615 627Right-handed alpha
Helix 44
44
C
627 638Right-handed alpha
Helix 45
45
C
646 671Right-handed alpha
Helix 46
46
C
679 704Right-handed alpha
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There are 8 sheets in PDB entry 3PUQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
250 252anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
282 283anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
355 360parallel
Strand 3
A
558 561anti-parallel
Strand 4
A
502 517anti-parallel
Strand 5
A
566 582anti-parallel
Strand 6
A
490 495anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 402first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
420 426anti-parallel
Strand 4
A
482 486anti-parallel
Strand 5
A
566 582anti-parallel
Strand 6
A
502 517anti-parallel
Strand 7
A
549 554anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 243first strand
Strand 2
C
250 252anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 268first strand
Strand 2
C
282 283anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
330 335first strand
Strand 2
C
355 360parallel
Strand 3
C
558 561anti-parallel
Strand 4
C
502 517anti-parallel
Strand 5
C
566 582anti-parallel
Strand 6
C
490 495anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 402first strand
Strand 2
C
387 392anti-parallel
Strand 3
C
420 426anti-parallel
Strand 4
C
482 486anti-parallel
Strand 5
C
566 582anti-parallel
Strand 6
C
502 517anti-parallel
Strand 7
C
549 554anti-parallel
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