Analysis of interatomic Contacts of Structural Units in PDB entry:
3PV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PV3 entry

There are 8 chains in PDB entry 3PV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	ILE 439
B	MET 6	ILE 439
C	MET 6	ILE 439
D	MET 6	ILE 439
E	UNK 12	UNK 17
F	UNK 12	UNK 18
G	UNK 13	UNK 18
H	UNK 11	UNK 18

There are 38 helices in PDB entry 3PV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	17	Right-handed alpha
Helix 2	2	A	132	136	Right-handed 310
Helix 3	3	A	227	241	Right-handed alpha
Helix 4	4	A	256	262	Right-handed alpha
Helix 5	5	A	281	286	Right-handed alpha
Helix 6	6	A	306	315	Right-handed alpha
Helix 7	7	A	340	350	Right-handed alpha
Helix 8	8	A	385	391	Right-handed alpha
Helix 9	9	A	408	417	Right-handed alpha
Helix 10	10	B	9	15	Right-handed alpha
Helix 11	11	B	16	18	Right-handed 310
Helix 12	12	B	82	87	Right-handed alpha
Helix 13	13	B	227	240	Right-handed alpha
Helix 14	14	B	256	263	Right-handed alpha
Helix 15	15	B	281	287	Right-handed alpha
Helix 16	16	B	305	313	Right-handed alpha
Helix 17	17	B	340	349	Right-handed alpha
Helix 18	18	B	385	391	Right-handed alpha
Helix 19	19	B	408	413	Right-handed alpha
Helix 20	20	C	9	16	Right-handed alpha
Helix 21	21	C	83	87	Right-handed alpha
Helix 22	22	C	132	136	Right-handed 310
Helix 23	23	C	227	241	Right-handed alpha
Helix 24	24	C	256	263	Right-handed alpha
Helix 25	25	C	281	286	Right-handed alpha
Helix 26	26	C	306	313	Right-handed alpha
Helix 27	27	C	341	352	Right-handed alpha
Helix 28	28	C	385	391	Right-handed alpha
Helix 29	29	C	408	416	Right-handed alpha
Helix 30	30	D	9	17	Right-handed alpha
Helix 31	31	D	82	87	Right-handed alpha
Helix 32	32	D	227	241	Right-handed alpha
Helix 33	33	D	256	263	Right-handed alpha
Helix 34	34	D	281	286	Right-handed alpha
Helix 35	35	D	304	313	Right-handed alpha
Helix 36	36	D	341	352	Right-handed alpha
Helix 37	37	D	385	391	Right-handed alpha
Helix 38	38	D	408	417	Right-handed alpha

There are 24 sheets in PDB entry 3PV3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	91	95	anti-parallel
Strand 3	A	20	28	anti-parallel
Strand 4	A	62	73	anti-parallel
Strand 5	A	78	82	anti-parallel
Strand 6	A	115	119	anti-parallel
Strand 7	A	105	110	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	222	226	anti-parallel
Strand 4	A	181	184	anti-parallel
Strand 5	A	159	170	anti-parallel
Strand 6	A	141	146	anti-parallel
Strand 7	A	196	199	anti-parallel
Strand 8	A	204	211	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	320	327	anti-parallel
Strand 5	A	330	337	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	367	first strand
Strand 2	A	371	381	anti-parallel
Strand 3	A	397	401	anti-parallel
Strand 4	A	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	367	first strand
Strand 2	A	371	381	anti-parallel
Strand 3	A	397	401	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	432	438	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	89	95	anti-parallel
Strand 3	B	20	27	anti-parallel
Strand 4	B	63	73	anti-parallel
Strand 5	B	78	81	anti-parallel
Strand 6	B	115	119	anti-parallel
Strand 7	B	105	110	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	B	204	211	anti-parallel
Strand 3	B	222	226	anti-parallel
Strand 4	B	181	184	anti-parallel
Strand 5	B	161	170	anti-parallel
Strand 6	B	141	144	anti-parallel
Strand 7	B	196	199	anti-parallel
Strand 8	B	204	211	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	300	301	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	322	327	anti-parallel
Strand 5	B	330	335	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	364	first strand
Strand 2	B	374	381	anti-parallel
Strand 3	B	396	401	anti-parallel
Strand 4	B	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	364	first strand
Strand 2	B	374	381	anti-parallel
Strand 3	B	396	401	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	432	438	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	20	27	anti-parallel
Strand 4	C	63	73	anti-parallel
Strand 5	C	78	82	anti-parallel
Strand 6	C	115	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	159	168	anti-parallel
Strand 3	C	182	184	anti-parallel
Strand 4	C	222	226	anti-parallel
Strand 5	C	204	207	anti-parallel
Strand 6	C	196	199	anti-parallel
Strand 7	C	141	146	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	339	340	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	320	327	anti-parallel
Strand 5	C	330	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	366	first strand
Strand 2	C	372	381	anti-parallel
Strand 3	C	397	398	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	405	first strand
Strand 2	C	400	401	anti-parallel
Strand 3	C	423	429	anti-parallel
Strand 4	C	432	438	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	28	first strand
Strand 2	D	62	73	anti-parallel
Strand 3	D	78	81	anti-parallel
Strand 4	D	116	119	anti-parallel
Strand 5	D	101	108	anti-parallel
Strand 6	D	89	95	anti-parallel
Strand 7	D	20	28	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	146	first strand
Strand 2	D	159	168	anti-parallel
Strand 3	D	182	184	anti-parallel
Strand 4	D	222	226	anti-parallel
Strand 5	D	204	211	anti-parallel
Strand 6	D	196	199	anti-parallel
Strand 7	D	141	146	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	339	340	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	300	301	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	320	327	anti-parallel
Strand 5	D	330	337	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	367	first strand
Strand 2	D	371	381	anti-parallel
Strand 3	D	397	401	anti-parallel
Strand 4	D	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	367	first strand
Strand 2	D	371	381	anti-parallel
Strand 3	D	397	401	anti-parallel
Strand 4	D	423	429	anti-parallel
Strand 5	D	432	438	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PV3