Analysis of interatomic Contacts of Structural Units in PDB entry:
3PV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PV4 entry

There is 1 chain in PDB entry 3PV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6ASP 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3PV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
111 113Right-handed 310
Helix 3
3
A
132 136Right-handed 310
Helix 4
4
A
227 240Right-handed alpha
Helix 5
5
A
256 263Right-handed alpha
Helix 6
6
A
281 286Right-handed alpha
Helix 7
7
A
306 314Right-handed alpha
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There are 4 sheets in PDB entry 3PV4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
62 73anti-parallel
Strand 4
A
78 82anti-parallel
Strand 5
A
115 120anti-parallel
Strand 6
A
104 110anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
182 184anti-parallel
Strand 4
A
222 226anti-parallel
Strand 5
A
204 208anti-parallel
Strand 6
A
196 199anti-parallel
Strand 7
A
141 146anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
320 327anti-parallel
Strand 5
A
330 332anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
320 327anti-parallel
Strand 4
A
335 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il