Analysis of interatomic Contacts of Structural Units in PDB entry:
3PV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PV5 entry

There are 4 chains in PDB entry 3PV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	ILE 439
B	PRO 7	ILE 439
C	MET 6	ILE 439
D	PRO 7	ILE 439

There are 40 helices in PDB entry 3PV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	17	Right-handed alpha
Helix 2	2	A	82	87	Right-handed alpha
Helix 3	3	A	132	136	Right-handed 310
Helix 4	4	A	227	241	Right-handed alpha
Helix 5	5	A	256	264	Right-handed alpha
Helix 6	6	A	281	286	Right-handed alpha
Helix 7	7	A	304	314	Right-handed alpha
Helix 8	8	A	340	352	Right-handed alpha
Helix 9	9	A	385	390	Right-handed alpha
Helix 10	10	A	408	417	Right-handed alpha
Helix 11	11	B	9	17	Right-handed alpha
Helix 12	12	B	82	87	Right-handed alpha
Helix 13	13	B	132	136	Right-handed 310
Helix 14	14	B	227	241	Right-handed alpha
Helix 15	15	B	256	263	Right-handed alpha
Helix 16	16	B	281	286	Right-handed alpha
Helix 17	17	B	304	315	Right-handed alpha
Helix 18	18	B	340	352	Right-handed alpha
Helix 19	19	B	385	391	Right-handed alpha
Helix 20	20	B	408	417	Right-handed alpha
Helix 21	21	C	9	17	Right-handed alpha
Helix 22	22	C	82	87	Right-handed alpha
Helix 23	23	C	132	136	Right-handed 310
Helix 24	24	C	227	241	Right-handed alpha
Helix 25	25	C	256	263	Right-handed alpha
Helix 26	26	C	281	286	Right-handed alpha
Helix 27	27	C	305	315	Right-handed alpha
Helix 28	28	C	340	351	Right-handed alpha
Helix 29	29	C	385	391	Right-handed alpha
Helix 30	30	C	408	417	Right-handed alpha
Helix 31	31	D	9	17	Right-handed alpha
Helix 32	32	D	82	87	Right-handed alpha
Helix 33	33	D	132	136	Right-handed 310
Helix 34	34	D	227	241	Right-handed alpha
Helix 35	35	D	256	263	Right-handed alpha
Helix 36	36	D	281	287	Right-handed alpha
Helix 37	37	D	304	314	Right-handed alpha
Helix 38	38	D	341	352	Right-handed alpha
Helix 39	39	D	385	391	Right-handed alpha
Helix 40	40	D	408	417	Right-handed alpha

There are 25 sheets in PDB entry 3PV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	89	95	anti-parallel
Strand 3	A	20	27	anti-parallel
Strand 4	A	63	73	anti-parallel
Strand 5	A	78	81	anti-parallel
Strand 6	A	115	119	anti-parallel
Strand 7	A	105	110	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	145	first strand
Strand 2	A	160	167	anti-parallel
Strand 3	A	182	184	anti-parallel
Strand 4	A	222	226	anti-parallel
Strand 5	A	204	209	anti-parallel
Strand 6	A	196	199	anti-parallel
Strand 7	A	141	145	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	300	301	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	320	327	anti-parallel
Strand 5	A	330	337	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	366	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	397	401	anti-parallel
Strand 4	A	404	405	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	366	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	397	401	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	432	438	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	89	95	anti-parallel
Strand 3	B	20	27	anti-parallel
Strand 4	B	63	73	anti-parallel
Strand 5	B	78	81	anti-parallel
Strand 6	B	115	119	anti-parallel
Strand 7	B	105	110	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	145	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	182	184	anti-parallel
Strand 4	B	222	226	anti-parallel
Strand 5	B	204	209	anti-parallel
Strand 6	B	196	199	anti-parallel
Strand 7	B	141	145	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	300	301	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	320	327	anti-parallel
Strand 5	B	330	337	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	366	first strand
Strand 2	B	372	381	anti-parallel
Strand 3	B	397	401	anti-parallel
Strand 4	B	404	405	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	366	first strand
Strand 2	B	372	381	anti-parallel
Strand 3	B	397	401	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	432	438	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	89	95	anti-parallel
Strand 3	C	20	27	anti-parallel
Strand 4	C	63	73	anti-parallel
Strand 5	C	78	81	anti-parallel
Strand 6	C	115	119	anti-parallel
Strand 7	C	105	110	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	145	first strand
Strand 2	C	160	167	anti-parallel
Strand 3	C	182	184	anti-parallel
Strand 4	C	222	226	anti-parallel
Strand 5	C	204	208	anti-parallel
Strand 6	C	196	199	anti-parallel
Strand 7	C	141	145	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	300	301	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	320	327	anti-parallel
Strand 5	C	330	337	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	366	first strand
Strand 2	C	372	381	anti-parallel
Strand 3	C	397	401	anti-parallel
Strand 4	C	404	405	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	366	first strand
Strand 2	C	372	381	anti-parallel
Strand 3	C	397	401	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	432	438	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	89	95	anti-parallel
Strand 3	D	20	27	anti-parallel
Strand 4	D	63	73	anti-parallel
Strand 5	D	78	81	anti-parallel
Strand 6	D	115	119	anti-parallel
Strand 7	D	105	110	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	160	167	anti-parallel
Strand 3	D	182	184	anti-parallel
Strand 4	D	222	226	anti-parallel
Strand 5	D	204	209	anti-parallel
Strand 6	D	196	199	anti-parallel
Strand 7	D	141	145	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	339	340	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	300	301	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	320	327	anti-parallel
Strand 5	D	330	337	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	366	first strand
Strand 2	D	372	381	anti-parallel
Strand 3	D	397	401	anti-parallel
Strand 4	D	404	405	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	366	first strand
Strand 2	D	372	381	anti-parallel
Strand 3	D	397	401	anti-parallel
Strand 4	D	423	429	anti-parallel
Strand 5	D	432	438	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PV5