Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 3PVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 9
A
 GLU 11PHE 138
A
 GLU 140TRP 196
A
 LEU 198VAL 337
A
 ILE 339PHE 350
B
 PRO 84MET 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3PVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 31Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
A
129 134Right-handed alpha
Helix 5
5
A
139 159Right-handed alpha
Helix 6
6
A
168 172Right-handed 310
Helix 7
7
A
201 205Right-handed 310
Helix 8
8
A
206 212Right-handed alpha
Helix 9
9
A
217 232Right-handed alpha
Helix 10
10
A
242 253Right-handed alpha
Helix 11
11
A
262 273Right-handed alpha
Helix 12
12
A
276 280Right-handed 310
Helix 13
13
A
288 293Right-handed alpha
Helix 14
14
A
294 298Right-handed 310
Helix 15
15
A
301 308Right-handed alpha
Helix 16
16
B
104 109Right-handed alpha
Helix 17
17
B
119 130Right-handed alpha
Helix 18
18
B
140 145Right-handed alpha
Helix 19
19
B
145 151Right-handed alpha
Helix 20
20
B
201 206Right-handed alpha
Helix 21
21
B
226 239Right-handed alpha
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There are 5 sheets in PDB entry 3PVB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
61 62anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
56 58anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
106 111anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
B
98 99anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
219 225anti-parallel
Strand 3
B
171 178anti-parallel
Strand 4
B
197 198anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
180 183anti-parallel
Strand 3
B
212 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il