Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVC entry

There is 1 chain in PDB entry 3PVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 29GLY 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3PVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 42Right-handed alpha
Helix 2
2
A
49 55Right-handed alpha
Helix 3
3
A
70 87Right-handed alpha
Helix 4
4
A
106 115Right-handed alpha
Helix 5
5
A
116 119Right-handed 310
Helix 6
6
A
120 130Right-handed alpha
Helix 7
7
A
156 161Right-handed alpha
Helix 8
8
A
162 164Right-handed 310
Helix 9
9
A
165 169Right-handed 310
Helix 10
10
A
190 200Right-handed alpha
Helix 11
11
A
213 223Right-handed alpha
Helix 12
12
A
253 257Right-handed 310
Helix 13
13
A
273 285Right-handed alpha
Helix 14
14
A
302 306Right-handed 310
Helix 15
15
A
320 343Right-handed alpha
Helix 16
16
A
360 371Right-handed alpha
Helix 17
17
A
384 393Right-handed alpha
Helix 18
18
A
410 425Right-handed alpha
Helix 19
19
A
465 469Right-handed 310
Helix 20
20
A
495 499Right-handed 310
Helix 21
21
A
535 550Right-handed alpha
Helix 22
22
A
554 559Right-handed 310
Helix 23
23
A
586 594Right-handed alpha
Helix 24
24
A
596 601Right-handed alpha
Helix 25
25
A
630 647Right-handed alpha
Helix 26
26
A
654 660Right-handed alpha
Helix 27
27
A
664 672Right-handed alpha
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There are 6 sheets in PDB entry 3PVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
94 101parallel
Strand 4
A
59 65parallel
Strand 5
A
172 177parallel
Strand 6
A
201 209parallel
Strand 7
A
238 243anti-parallel
Strand 8
A
226 231anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 431first strand
Strand 2
A
290 294parallel
Strand 3
A
267 270parallel
Strand 4
A
460 463parallel
Strand 5
A
617 625parallel
Strand 6
A
580 585anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
407 409anti-parallel
Strand 3
A
349 350anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
400 403anti-parallel
Strand 3
A
354 357anti-parallel
Strand 4
A
502 504parallel
Strand 5
A
508 509anti-parallel
Strand 6
A
518 522anti-parallel
Strand 7
A
481 491anti-parallel
Strand 8
A
526 527anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
400 403anti-parallel
Strand 3
A
354 357anti-parallel
Strand 4
A
502 504parallel
Strand 5
A
508 509anti-parallel
Strand 6
A
518 522anti-parallel
Strand 7
A
481 491anti-parallel
Strand 8
A
566 573anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 440first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
456 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il