Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PVJ entry

There are 3 chains in PDB entry 3PVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	PHE 277
B	SER 2	PHE 277
C	SER 2	TYR 71

There are 41 helices in PDB entry 3PVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	41	Right-handed alpha
Helix 2	2	A	51	60	Right-handed alpha
Helix 3	3	A	61	63	Right-handed 310
Helix 4	4	A	90	94	Right-handed 310
Helix 5	5	A	129	136	Right-handed alpha
Helix 6	6	A	137	145	Right-handed alpha
Helix 7	7	A	153	156	Right-handed 310
Helix 8	8	A	158	162	Right-handed 310
Helix 9	9	A	165	179	Right-handed alpha
Helix 10	10	A	212	228	Right-handed alpha
Helix 11	11	A	229	231	Right-handed 310
Helix 12	12	B	26	41	Right-handed alpha
Helix 13	13	B	51	60	Right-handed alpha
Helix 14	14	B	61	63	Right-handed 310
Helix 15	15	B	90	94	Right-handed 310
Helix 16	16	B	129	136	Right-handed alpha
Helix 17	17	B	137	145	Right-handed alpha
Helix 18	18	B	153	156	Right-handed 310
Helix 19	19	B	158	163	Right-handed alpha
Helix 20	20	B	165	179	Right-handed alpha
Helix 21	21	B	212	228	Right-handed alpha
Helix 22	22	B	229	231	Right-handed 310
Helix 23	23	C	26	41	Right-handed alpha
Helix 24	24	C	51	60	Right-handed alpha
Helix 25	25	C	61	63	Right-handed 310
Helix 26	26	C	129	136	Right-handed alpha
Helix 27	27	C	137	145	Right-handed alpha
Helix 28	28	C	153	156	Right-handed 310
Helix 29	29	C	158	163	Right-handed alpha
Helix 30	30	C	165	179	Right-handed alpha
Helix 31	31	C	212	228	Right-handed alpha
Helix 32	32	C	229	231	Right-handed 310
Helix 33	33	D	26	41	Right-handed alpha
Helix 34	34	D	51	60	Right-handed alpha
Helix 35	35	D	129	136	Right-handed alpha
Helix 36	36	D	137	145	Right-handed alpha
Helix 37	37	D	153	156	Right-handed 310
Helix 38	38	D	158	163	Right-handed alpha
Helix 39	39	D	165	179	Right-handed alpha
Helix 40	40	D	212	228	Right-handed alpha
Helix 41	41	D	229	231	Right-handed 310

There are 18 sheets in PDB entry 3PVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	14	17	anti-parallel
Strand 3	A	42	45	parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	109	116	anti-parallel
Strand 6	A	265	271	anti-parallel
Strand 7	A	65	66	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	14	17	anti-parallel
Strand 3	A	42	45	parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	109	116	anti-parallel
Strand 6	A	265	271	anti-parallel
Strand 7	A	77	84	anti-parallel
Strand 8	A	73	74	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	251	255	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	148	151	anti-parallel
Strand 3	A	205	208	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	196	198	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	14	17	anti-parallel
Strand 3	B	42	45	parallel
Strand 4	B	243	247	anti-parallel
Strand 5	B	109	116	anti-parallel
Strand 6	B	265	271	anti-parallel
Strand 7	B	77	84	anti-parallel
Strand 8	B	73	74	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	236	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	251	255	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	148	151	anti-parallel
Strand 3	B	205	208	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	196	198	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	14	17	anti-parallel
Strand 3	C	42	45	parallel
Strand 4	C	243	247	anti-parallel
Strand 5	C	109	116	anti-parallel
Strand 6	C	265	271	anti-parallel
Strand 7	C	65	66	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	14	17	anti-parallel
Strand 3	C	42	45	parallel
Strand 4	C	243	247	anti-parallel
Strand 5	C	109	116	anti-parallel
Strand 6	C	265	271	anti-parallel
Strand 7	C	77	83	anti-parallel
Strand 8	C	73	74	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	236	first strand
Strand 2	C	124	128	anti-parallel
Strand 3	C	251	255	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	185	first strand
Strand 2	C	148	151	anti-parallel
Strand 3	C	205	208	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	196	198	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	14	17	anti-parallel
Strand 3	D	42	45	parallel
Strand 4	D	243	247	anti-parallel
Strand 5	D	109	116	anti-parallel
Strand 6	D	265	271	anti-parallel
Strand 7	D	77	84	anti-parallel
Strand 8	D	73	74	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	236	first strand
Strand 2	D	124	128	anti-parallel
Strand 3	D	251	255	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	185	first strand
Strand 2	D	148	151	anti-parallel
Strand 3	D	205	208	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	189	first strand
Strand 2	D	196	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVJ