Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVL entry

There are 2 chains in PDB entry 3PVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 993MET 1648
B
 SER 305ASN 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3PVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1000 1009Right-handed alpha
Helix 2
2
A
1031 1049Right-handed alpha
Helix 3
3
A
1069 1076Right-handed alpha
Helix 4
4
A
1083 1089Right-handed alpha
Helix 5
5
A
1149 1164Right-handed alpha
Helix 6
6
A
1167 1179Right-handed alpha
Helix 7
7
A
1184 1202Right-handed alpha
Helix 8
8
A
1208 1218Right-handed alpha
Helix 9
9
A
1223 1238Right-handed alpha
Helix 10
10
A
1245 1255Right-handed alpha
Helix 11
11
A
1279 1291Right-handed alpha
Helix 12
12
A
1318 1332Right-handed alpha
Helix 13
13
A
1336 1340Right-handed 310
Helix 14
14
A
1356 1359Right-handed 310
Helix 15
15
A
1360 1377Right-handed alpha
Helix 16
16
A
1384 1401Right-handed alpha
Helix 17
17
A
1405 1417Right-handed alpha
Helix 18
18
A
1418 1422Right-handed 310
Helix 19
19
A
1427 1445Right-handed alpha
Helix 20
20
A
1450 1466Right-handed alpha
Helix 21
21
A
1548 1567Right-handed alpha
Helix 22
22
A
1601 1608Right-handed alpha
Helix 23
23
A
1639 1647Right-handed alpha
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There are 3 sheets in PDB entry 3PVL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1269 1274first strand
Strand 2
A
1258 1264anti-parallel
Strand 3
A
1343 1348parallel
Strand 4
A
1299 1305anti-parallel
Strand 5
A
1308 1313anti-parallel
Strand 6
B
313 315parallel
Strand 7
B
308 309anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1507 1512first strand
Strand 2
A
1497 1501anti-parallel
Strand 3
A
1488 1494anti-parallel
Strand 4
A
1472 1480anti-parallel
Strand 5
A
1541 1545anti-parallel
Strand 6
A
1531 1536anti-parallel
Strand 7
A
1516 1522anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1621 1625first strand
Strand 2
A
1610 1615anti-parallel
Strand 3
A
1594 1596anti-parallel
Strand 4
A
1569 1572anti-parallel
Strand 5
A
1629 1631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il