Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVR entry

There are 3 chains in PDB entry 3PVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1LYS 302
B
 SER 1MET 236
C
 SER 1TRP 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3PVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
24 45Right-handed alpha
Helix 3
3
A
45 51Right-handed alpha
Helix 4
4
A
52 56Right-handed 310
Helix 5
5
A
58 85Right-handed alpha
Helix 6
6
A
89 99Right-handed alpha
Helix 7
7
A
105 110Right-handed 310
Helix 8
8
A
114 135Right-handed alpha
Helix 9
9
A
141 171Right-handed alpha
Helix 10
10
A
173 194Right-handed alpha
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
A
204 211Right-handed alpha
Helix 13
13
A
217 236Right-handed alpha
Helix 14
14
A
260 269Right-handed alpha
Helix 15
15
A
274 289Right-handed alpha
Helix 16
16
A
289 302Right-handed alpha
Helix 17
17
B
1 25Right-handed alpha
Helix 18
18
B
31 61Right-handed alpha
Helix 19
19
B
64 71Right-handed alpha
Helix 20
20
B
73 77Right-handed 310
Helix 21
21
B
80 85Right-handed alpha
Helix 22
22
B
89 112Right-handed alpha
Helix 23
23
B
116 146Right-handed alpha
Helix 24
24
B
149 163Right-handed alpha
Helix 25
25
B
164 171Right-handed 310
Helix 26
26
B
173 181Right-handed alpha
Helix 27
27
B
187 190Right-handed 310
Helix 28
28
B
191 206Right-handed alpha
Helix 29
29
B
219 223Right-handed 310
Helix 30
30
B
228 236Right-handed alpha
Helix 31
31
C
1 24Right-handed alpha
Helix 32
32
C
31 61Right-handed alpha
Helix 33
33
C
64 71Right-handed alpha
Helix 34
34
C
80 85Right-handed 310
Helix 35
35
C
89 112Right-handed alpha
Helix 36
36
C
116 146Right-handed alpha
Helix 37
37
C
148 163Right-handed alpha
Helix 38
38
C
164 170Right-handed 310
Helix 39
39
C
173 182Right-handed alpha
Helix 40
40
C
187 190Right-handed 310
Helix 41
41
C
191 206Right-handed alpha
Helix 42
42
C
219 223Right-handed 310
Helix 43
43
C
228 243Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3PVR.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
253 255anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il