Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVS entry

There are 4 chains in PDB entry 3PVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 14TYR 446
B
GLN 14TYR 446
C
GLN 14ARG 447
D
GLN 14ALA 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 3PVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
39 48Right-handed alpha
Helix 4
4
A
62 74Right-handed alpha
Helix 5
5
A
87 104Right-handed alpha
Helix 6
6
A
126 132Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
150 155Right-handed alpha
Helix 9
9
A
166 180Right-handed alpha
Helix 10
10
A
193 205Right-handed alpha
Helix 11
11
A
207 222Right-handed alpha
Helix 12
12
A
233 242Right-handed alpha
Helix 13
13
A
252 268Right-handed alpha
Helix 14
14
A
270 284Right-handed alpha
Helix 15
15
A
287 302Right-handed alpha
Helix 16
16
A
303 307Right-handed 310
Helix 17
17
A
308 324Right-handed alpha
Helix 18
18
A
325 343Right-handed alpha
Helix 19
19
A
347 363Right-handed alpha
Helix 20
20
A
369 373Right-handed 310
Helix 21
21
A
391 399Right-handed 310
Helix 22
22
A
407 411Right-handed 310
Helix 23
23
A
423 440Right-handed alpha
Helix 24
24
B
15 20Right-handed alpha
Helix 25
25
B
31 36Right-handed alpha
Helix 26
26
B
39 47Right-handed alpha
Helix 27
27
B
62 74Right-handed alpha
Helix 28
28
B
87 104Right-handed alpha
Helix 29
29
B
119 124Right-handed alpha
Helix 30
30
B
126 132Right-handed alpha
Helix 31
31
B
150 155Right-handed alpha
Helix 32
32
B
166 180Right-handed alpha
Helix 33
33
B
193 205Right-handed alpha
Helix 34
34
B
207 222Right-handed alpha
Helix 35
35
B
233 241Right-handed alpha
Helix 36
36
B
252 268Right-handed alpha
Helix 37
37
B
270 284Right-handed alpha
Helix 38
38
B
287 302Right-handed alpha
Helix 39
39
B
303 307Right-handed 310
Helix 40
40
B
308 325Right-handed alpha
Helix 41
41
B
325 343Right-handed alpha
Helix 42
42
B
347 363Right-handed alpha
Helix 43
43
B
369 373Right-handed 310
Helix 44
44
B
391 399Right-handed 310
Helix 45
45
B
407 411Right-handed 310
Helix 46
46
B
423 440Right-handed alpha
Helix 47
47
C
15 20Right-handed alpha
Helix 48
48
C
31 36Right-handed alpha
Helix 49
49
C
39 48Right-handed alpha
Helix 50
50
C
62 74Right-handed alpha
Helix 51
51
C
87 104Right-handed alpha
Helix 52
52
C
115 118Right-handed 310
Helix 53
53
C
119 125Right-handed alpha
Helix 54
54
C
126 132Right-handed alpha
Helix 55
55
C
144 149Right-handed alpha
Helix 56
56
C
150 155Right-handed alpha
Helix 57
57
C
166 179Right-handed alpha
Helix 58
58
C
193 205Right-handed alpha
Helix 59
59
C
207 222Right-handed alpha
Helix 60
60
C
233 239Right-handed alpha
Helix 61
61
C
252 268Right-handed alpha
Helix 62
62
C
270 284Right-handed alpha
Helix 63
63
C
287 302Right-handed alpha
Helix 64
64
C
303 307Right-handed 310
Helix 65
65
C
308 324Right-handed alpha
Helix 66
66
C
325 343Right-handed alpha
Helix 67
67
C
347 363Right-handed alpha
Helix 68
68
C
369 373Right-handed 310
Helix 69
69
C
391 399Right-handed 310
Helix 70
70
C
407 411Right-handed 310
Helix 71
71
C
423 440Right-handed alpha
Helix 72
72
D
15 20Right-handed alpha
Helix 73
73
D
31 36Right-handed alpha
Helix 74
74
D
39 48Right-handed alpha
Helix 75
75
D
62 75Right-handed alpha
Helix 76
76
D
87 104Right-handed alpha
Helix 77
77
D
114 118Right-handed 310
Helix 78
78
D
119 125Right-handed alpha
Helix 79
79
D
126 132Right-handed alpha
Helix 80
80
D
144 149Right-handed alpha
Helix 81
81
D
150 155Right-handed alpha
Helix 82
82
D
166 180Right-handed alpha
Helix 83
83
D
193 205Right-handed alpha
Helix 84
84
D
207 222Right-handed alpha
Helix 85
85
D
233 240Right-handed alpha
Helix 86
86
D
252 268Right-handed alpha
Helix 87
87
D
270 284Right-handed alpha
Helix 88
88
D
287 302Right-handed alpha
Helix 89
89
D
303 307Right-handed 310
Helix 90
90
D
308 322Right-handed alpha
Helix 91
91
D
325 343Right-handed alpha
Helix 92
92
D
347 363Right-handed alpha
Helix 93
93
D
369 373Right-handed 310
Helix 94
94
D
377 384Right-handed alpha
Helix 95
95
D
391 399Right-handed 310
Helix 96
96
D
407 411Right-handed 310
Helix 97
97
D
423 440Right-handed alpha
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There are 8 sheets in PDB entry 3PVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 82first strand
Strand 2
A
108 113parallel
Strand 3
A
136 141parallel
Strand 4
A
52 56parallel
Strand 5
A
157 161parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 191first strand
Strand 2
A
230 231parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
77 82first strand
Strand 2
B
108 113parallel
Strand 3
B
136 141parallel
Strand 4
B
53 56parallel
Strand 5
B
158 161parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 191first strand
Strand 2
B
230 231parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 82first strand
Strand 2
C
108 113parallel
Strand 3
C
136 141parallel
Strand 4
C
53 56parallel
Strand 5
C
158 161parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
190 191first strand
Strand 2
C
230 231parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
77 82first strand
Strand 2
D
108 113parallel
Strand 3
D
136 141parallel
Strand 4
D
53 56parallel
Strand 5
D
158 161parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
190 191first strand
Strand 2
D
230 231parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il