Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVZ entry

There are 4 chains in PDB entry 3PVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PHE 383
B
 LEU 5ASP 393
C
 SER 3GLY 384
D
 SER 3LYS 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3PVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
15 32Right-handed alpha
Helix 3
3
A
42 54Right-handed alpha
Helix 4
4
A
66 81Right-handed alpha
Helix 5
5
A
97 107Right-handed alpha
Helix 6
6
A
121 126Right-handed 310
Helix 7
7
A
127 139Right-handed alpha
Helix 8
8
A
139 152Right-handed alpha
Helix 9
9
A
170 187Right-handed alpha
Helix 10
10
A
206 217Right-handed alpha
Helix 11
11
A
233 248Right-handed alpha
Helix 12
12
A
267 278Right-handed alpha
Helix 13
13
A
287 298Right-handed alpha
Helix 14
14
A
347 365Right-handed alpha
Helix 15
15
A
368 380Right-handed alpha
Helix 16
16
B
15 32Right-handed alpha
Helix 17
17
B
42 54Right-handed alpha
Helix 18
18
B
66 82Right-handed alpha
Helix 19
19
B
97 107Right-handed alpha
Helix 20
20
B
121 126Right-handed 310
Helix 21
21
B
127 139Right-handed alpha
Helix 22
22
B
139 152Right-handed alpha
Helix 23
23
B
170 187Right-handed alpha
Helix 24
24
B
233 248Right-handed alpha
Helix 25
25
B
347 365Right-handed alpha
Helix 26
26
B
368 380Right-handed alpha
Helix 27
27
C
3 8Right-handed alpha
Helix 28
28
C
15 33Right-handed alpha
Helix 29
29
C
42 54Right-handed alpha
Helix 30
30
C
66 82Right-handed alpha
Helix 31
31
C
97 107Right-handed alpha
Helix 32
32
C
121 125Right-handed 310
Helix 33
33
C
127 139Right-handed alpha
Helix 34
34
C
139 153Right-handed alpha
Helix 35
35
C
170 187Right-handed alpha
Helix 36
36
C
206 218Right-handed alpha
Helix 37
37
C
233 248Right-handed alpha
Helix 38
38
C
267 279Right-handed alpha
Helix 39
39
C
287 295Right-handed alpha
Helix 40
40
C
296 301Right-handed 310
Helix 41
41
C
347 365Right-handed alpha
Helix 42
42
C
368 380Right-handed alpha
Helix 43
43
D
3 8Right-handed alpha
Helix 44
44
D
15 32Right-handed alpha
Helix 45
45
D
42 54Right-handed alpha
Helix 46
46
D
66 81Right-handed alpha
Helix 47
47
D
97 107Right-handed alpha
Helix 48
48
D
121 126Right-handed 310
Helix 49
49
D
127 139Right-handed alpha
Helix 50
50
D
139 152Right-handed alpha
Helix 51
51
D
170 187Right-handed alpha
Helix 52
52
D
206 217Right-handed alpha
Helix 53
53
D
233 248Right-handed alpha
Helix 54
54
D
267 278Right-handed alpha
Helix 55
55
D
287 298Right-handed alpha
Helix 56
56
D
299 301Right-handed 310
Helix 57
57
D
347 365Right-handed alpha
Helix 58
58
D
368 380Right-handed alpha
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There are 12 sheets in PDB entry 3PVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
59 63parallel
Strand 3
A
34 38parallel
Strand 4
A
112 115parallel
Strand 5
A
156 160parallel
Strand 6
A
191 195parallel
Strand 7
A
252 256parallel
Strand 8
A
337 341anti-parallel
Strand 9
A
329 330anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
231 232parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
303 309parallel
Strand 3
A
281 284parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
265 266anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
59 63parallel
Strand 3
B
34 38parallel
Strand 4
B
112 115parallel
Strand 5
B
156 160parallel
Strand 6
B
191 195parallel
Strand 7
B
253 256parallel
Strand 8
B
337 340anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 91first strand
Strand 2
C
59 63parallel
Strand 3
C
34 38parallel
Strand 4
C
112 115parallel
Strand 5
C
156 160parallel
Strand 6
C
192 195parallel
Strand 7
C
253 256parallel
Strand 8
C
337 341anti-parallel
Strand 9
C
328 330anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 224first strand
Strand 2
C
303 309parallel
Strand 3
C
281 284parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 230first strand
Strand 2
C
264 266anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 91first strand
Strand 2
D
59 63parallel
Strand 3
D
34 38parallel
Strand 4
D
112 115parallel
Strand 5
D
156 160parallel
Strand 6
D
191 195parallel
Strand 7
D
253 256parallel
Strand 8
D
337 341anti-parallel
Strand 9
D
328 330anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 200first strand
Strand 2
D
231 232parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
221 224first strand
Strand 2
D
303 309parallel
Strand 3
D
281 284parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 229first strand
Strand 2
D
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il