Analysis of interatomic Contacts of Structural Units in PDB entry:
3PWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PWV entry

There are 6 chains in PDB entry 3PWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLU 274
B
 ILE 1LEU 98
C
 ILE 1ILE 9
D
 SER 1GLU 274
E
 ILE 1LEU 98
F
 ILE 1ILE 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3PWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 52Right-handed 310
Helix 2
2
A
55 85Right-handed alpha
Helix 3
3
A
136 149Right-handed alpha
Helix 4
4
A
150 161Right-handed alpha
Helix 5
5
A
161 174Right-handed alpha
Helix 6
6
A
174 179Right-handed alpha
Helix 7
7
A
252 256Right-handed 310
Helix 8
8
D
48 52Right-handed 310
Helix 9
9
D
55 84Right-handed alpha
Helix 10
10
D
137 149Right-handed alpha
Helix 11
11
D
150 161Right-handed alpha
Helix 12
12
D
161 174Right-handed alpha
Helix 13
13
D
252 256Right-handed 310
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There are 14 sheets in PDB entry 3PWV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
20 27anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
93 102anti-parallel
Strand 6
A
108 117anti-parallel
Strand 7
A
120 125anti-parallel
Strand 8
A
132 134anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
197 207anti-parallel
Strand 3
A
240 249anti-parallel
Strand 4
A
227 229anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
197 207anti-parallel
Strand 3
A
240 249anti-parallel
Strand 4
A
233 234anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
269 271anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
49 50anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
54 55anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
90 93anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 46first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
20 27anti-parallel
Strand 4
D
2 11anti-parallel
Strand 5
D
93 102anti-parallel
Strand 6
D
108 117anti-parallel
Strand 7
D
120 125anti-parallel
Strand 8
D
132 134anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 192first strand
Strand 2
D
197 207anti-parallel
Strand 3
D
240 249anti-parallel
Strand 4
D
227 229anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 192first strand
Strand 2
D
197 207anti-parallel
Strand 3
D
240 249anti-parallel
Strand 4
D
233 234anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
221 222first strand
Strand 2
D
213 218anti-parallel
Strand 3
D
257 261anti-parallel
Strand 4
D
269 271anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
61 69anti-parallel
Strand 4
E
49 50anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
61 69anti-parallel
Strand 4
E
54 55anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
36 41anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
90 93anti-parallel
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