Analysis of interatomic Contacts of Structural Units in PDB entry:
3PYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PYB entry

There are 3 chains in PDB entry 3PYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 90GLY 803
B
 ASN 90GLY 803
C
 ASN 90GLY 803
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are119 helices in PDB entry 3PYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 107Right-handed alpha
Helix 2
2
A
116 125Right-handed alpha
Helix 3
3
A
135 145Right-handed alpha
Helix 4
4
A
159 176Right-handed alpha
Helix 5
5
A
180 199Right-handed alpha
Helix 6
6
A
200 201Right-handed 310
Helix 7
7
A
202 206Right-handed 310
Helix 8
8
A
209 223Right-handed alpha
Helix 9
9
A
234 246Right-handed alpha
Helix 10
10
A
250 257Right-handed alpha
Helix 11
11
A
259 264Right-handed 310
Helix 12
12
A
272 277Right-handed alpha
Helix 13
13
A
278 280Right-handed 310
Helix 14
14
A
289 301Right-handed alpha
Helix 15
15
A
302 316Right-handed alpha
Helix 16
16
A
326 341Right-handed alpha
Helix 17
17
A
343 346Right-handed 310
Helix 18
18
A
347 361Right-handed alpha
Helix 19
19
A
377 390Right-handed alpha
Helix 20
20
A
396 402Right-handed 310
Helix 21
21
A
419 430Right-handed alpha
Helix 22
22
A
431 433Right-handed 310
Helix 23
23
A
437 456Right-handed alpha
Helix 24
24
A
469 480Right-handed alpha
Helix 25
25
A
481 485Right-handed 310
Helix 26
26
A
486 498Right-handed alpha
Helix 27
27
A
499 503Right-handed 310
Helix 28
28
A
518 550Right-handed alpha
Helix 29
29
A
551 556Right-handed 310
Helix 30
30
A
558 573Right-handed alpha
Helix 31
31
A
575 577Right-handed 310
Helix 32
32
A
578 600Right-handed alpha
Helix 33
33
A
604 618Right-handed alpha
Helix 34
34
A
638 665Right-handed alpha
Helix 35
35
A
668 684Right-handed alpha
Helix 36
36
A
690 702Right-handed alpha
Helix 37
37
A
707 712Right-handed 310
Helix 38
38
A
713 727Right-handed alpha
Helix 39
39
A
743 761Right-handed alpha
Helix 40
40
A
766 787Right-handed alpha
Helix 41
41
A
790 800Right-handed alpha
Helix 42
42
B
91 107Right-handed alpha
Helix 43
43
B
116 125Right-handed alpha
Helix 44
44
B
135 145Right-handed alpha
Helix 45
45
B
159 176Right-handed alpha
Helix 46
46
B
180 195Right-handed alpha
Helix 47
47
B
196 200Right-handed 310
Helix 48
48
B
209 214Right-handed alpha
Helix 49
49
B
214 222Right-handed alpha
Helix 50
50
B
223 225Right-handed 310
Helix 51
51
B
234 249Right-handed alpha
Helix 52
52
B
250 255Right-handed alpha
Helix 53
53
B
259 264Right-handed 310
Helix 54
54
B
272 277Right-handed alpha
Helix 55
55
B
278 280Right-handed 310
Helix 56
56
B
289 301Right-handed alpha
Helix 57
57
B
302 316Right-handed alpha
Helix 58
58
B
326 341Right-handed alpha
Helix 59
59
B
343 346Right-handed 310
Helix 60
60
B
347 361Right-handed alpha
Helix 61
61
B
377 391Right-handed alpha
Helix 62
62
B
396 402Right-handed 310
Helix 63
63
B
419 431Right-handed alpha
Helix 64
64
B
437 457Right-handed alpha
Helix 65
65
B
469 480Right-handed alpha
Helix 66
66
B
481 485Right-handed 310
Helix 67
67
B
486 495Right-handed alpha
Helix 68
68
B
518 550Right-handed alpha
Helix 69
69
B
551 556Right-handed 310
Helix 70
70
B
558 573Right-handed alpha
Helix 71
71
B
575 577Right-handed 310
Helix 72
72
B
578 600Right-handed alpha
Helix 73
73
B
602 619Right-handed alpha
Helix 74
74
B
638 665Right-handed alpha
Helix 75
75
B
668 687Right-handed alpha
Helix 76
76
B
690 703Right-handed alpha
Helix 77
77
B
707 712Right-handed 310
Helix 78
78
B
713 727Right-handed alpha
Helix 79
79
B
738 760Right-handed alpha
Helix 80
80
B
765 787Right-handed alpha
Helix 81
81
B
790 799Right-handed alpha
Helix 82
82
C
91 107Right-handed alpha
Helix 83
83
C
116 124Right-handed alpha
Helix 84
84
C
135 145Right-handed alpha
Helix 85
85
C
159 177Right-handed alpha
Helix 86
86
C
180 193Right-handed alpha
Helix 87
87
C
194 199Right-handed 310
Helix 88
88
C
202 206Right-handed 310
Helix 89
89
C
209 221Right-handed alpha
Helix 90
90
C
222 225Right-handed 310
Helix 91
91
C
232 248Right-handed alpha
Helix 92
92
C
259 265Right-handed 310
Helix 93
93
C
272 277Right-handed alpha
Helix 94
94
C
289 301Right-handed alpha
Helix 95
95
C
302 316Right-handed alpha
Helix 96
96
C
326 341Right-handed alpha
Helix 97
97
C
343 346Right-handed 310
Helix 98
98
C
347 361Right-handed alpha
Helix 99
99
C
377 391Right-handed alpha
Helix 100
100
C
396 402Right-handed 310
Helix 101
101
C
419 431Right-handed alpha
Helix 102
102
C
437 458Right-handed alpha
Helix 103
103
C
469 480Right-handed alpha
Helix 104
104
C
486 495Right-handed alpha
Helix 105
105
C
499 503Right-handed 310
Helix 106
106
C
518 548Right-handed alpha
Helix 107
107
C
551 556Right-handed 310
Helix 108
108
C
558 571Right-handed alpha
Helix 109
109
C
575 577Right-handed 310
Helix 110
110
C
578 600Right-handed alpha
Helix 111
111
C
602 615Right-handed alpha
Helix 112
112
C
640 658Right-handed alpha
Helix 113
113
C
658 665Right-handed alpha
Helix 114
114
C
668 685Right-handed alpha
Helix 115
115
C
690 703Right-handed alpha
Helix 116
116
C
713 724Right-handed alpha
Helix 117
117
C
744 761Right-handed alpha
Helix 118
118
C
765 787Right-handed alpha
Helix 119
119
C
789 800Right-handed alpha
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There are 6 sheets in PDB entry 3PYB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
408 409anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
504 506anti-parallel
Strand 3
A
510 511anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 405first strand
Strand 2
B
408 409anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 466first strand
Strand 2
B
504 506anti-parallel
Strand 3
B
510 511anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
404 405first strand
Strand 2
C
408 409anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
465 466first strand
Strand 2
C
504 506anti-parallel
Strand 3
C
510 511anti-parallel
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