Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PZ6 entry

There are 6 chains in PDB entry 3PZ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 259	PRO 557
B	GLN 259	GLU 556
C	GLU 260	PRO 557
D	GLU 260	GLU 558
E	GLN 259	PRO 557
F	GLU 260	VAL 561

There are 70 helices in PDB entry 3PZ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	270	276	Right-handed alpha
Helix 2	2	A	310	322	Right-handed alpha
Helix 3	3	A	338	345	Right-handed 310
Helix 4	4	A	370	379	Right-handed alpha
Helix 5	5	A	399	403	Right-handed alpha
Helix 6	6	A	441	453	Right-handed alpha
Helix 7	7	A	454	456	Right-handed 310
Helix 8	8	A	457	462	Right-handed alpha
Helix 9	9	A	465	470	Right-handed alpha
Helix 10	10	A	487	496	Right-handed alpha
Helix 11	11	A	503	522	Right-handed alpha
Helix 12	12	A	533	548	Right-handed alpha
Helix 13	13	B	270	277	Right-handed alpha
Helix 14	14	B	278	280	Right-handed 310
Helix 15	15	B	310	322	Right-handed alpha
Helix 16	16	B	338	345	Right-handed 310
Helix 17	17	B	371	379	Right-handed alpha
Helix 18	18	B	399	403	Right-handed alpha
Helix 19	19	B	441	453	Right-handed alpha
Helix 20	20	B	454	456	Right-handed 310
Helix 21	21	B	457	462	Right-handed alpha
Helix 22	22	B	465	470	Right-handed alpha
Helix 23	23	B	487	496	Right-handed alpha
Helix 24	24	B	503	522	Right-handed alpha
Helix 25	25	B	533	548	Right-handed alpha
Helix 26	26	C	310	322	Right-handed alpha
Helix 27	27	C	338	345	Right-handed 310
Helix 28	28	C	371	379	Right-handed alpha
Helix 29	29	C	399	403	Right-handed alpha
Helix 30	30	C	441	453	Right-handed alpha
Helix 31	31	C	454	456	Right-handed 310
Helix 32	32	C	457	463	Right-handed alpha
Helix 33	33	C	465	470	Right-handed alpha
Helix 34	34	C	487	497	Right-handed alpha
Helix 35	35	C	505	522	Right-handed alpha
Helix 36	36	C	534	536	Right-handed 310
Helix 37	37	C	537	548	Right-handed alpha
Helix 38	38	D	270	275	Right-handed alpha
Helix 39	39	D	310	322	Right-handed alpha
Helix 40	40	D	338	345	Right-handed 310
Helix 41	41	D	370	379	Right-handed alpha
Helix 42	42	D	399	403	Right-handed alpha
Helix 43	43	D	441	454	Right-handed alpha
Helix 44	44	D	457	462	Right-handed alpha
Helix 45	45	D	465	470	Right-handed alpha
Helix 46	46	D	487	496	Right-handed alpha
Helix 47	47	D	505	521	Right-handed alpha
Helix 48	48	D	533	548	Right-handed alpha
Helix 49	49	E	270	274	Right-handed 310
Helix 50	50	E	310	322	Right-handed alpha
Helix 51	51	E	338	345	Right-handed 310
Helix 52	52	E	371	379	Right-handed alpha
Helix 53	53	E	399	403	Right-handed alpha
Helix 54	54	E	441	453	Right-handed alpha
Helix 55	55	E	454	456	Right-handed 310
Helix 56	56	E	457	462	Right-handed alpha
Helix 57	57	E	465	470	Right-handed alpha
Helix 58	58	E	487	495	Right-handed alpha
Helix 59	59	E	505	522	Right-handed alpha
Helix 60	60	E	533	548	Right-handed alpha
Helix 61	61	F	310	323	Right-handed alpha
Helix 62	62	F	338	345	Right-handed 310
Helix 63	63	F	371	378	Right-handed alpha
Helix 64	64	F	399	403	Right-handed alpha
Helix 65	65	F	441	454	Right-handed alpha
Helix 66	66	F	457	463	Right-handed alpha
Helix 67	67	F	465	470	Right-handed alpha
Helix 68	68	F	487	496	Right-handed alpha
Helix 69	69	F	505	522	Right-handed alpha
Helix 70	70	F	533	548	Right-handed alpha

There are 18 sheets in PDB entry 3PZ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	398	first strand
Strand 2	A	355	362	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	329	336	parallel
Strand 5	A	260	268	anti-parallel
Strand 6	A	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	398	first strand
Strand 2	A	355	362	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	329	336	parallel
Strand 5	A	433	436	parallel
Strand 6	A	347	350	anti-parallel
Strand 7	A	417	421	parallel
Strand 8	A	406	408	anti-parallel
Strand 9	A	260	268	anti-parallel
Strand 10	A	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	398	first strand
Strand 2	B	355	360	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	329	336	parallel
Strand 5	B	262	268	anti-parallel
Strand 6	B	406	408	anti-parallel
Strand 7	B	417	421	anti-parallel
Strand 8	B	347	350	parallel
Strand 9	B	433	436	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	398	first strand
Strand 2	B	355	360	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	329	336	parallel
Strand 5	B	262	268	anti-parallel
Strand 6	B	551	553	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	398	first strand
Strand 2	C	355	362	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	329	336	parallel
Strand 5	C	261	268	anti-parallel
Strand 6	C	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	398	first strand
Strand 2	C	355	362	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	329	336	parallel
Strand 5	C	434	436	parallel
Strand 6	C	347	350	anti-parallel
Strand 7	C	417	421	parallel
Strand 8	C	406	408	anti-parallel
Strand 9	C	261	268	anti-parallel
Strand 10	C	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	398	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	330	336	parallel
Strand 5	D	261	268	anti-parallel
Strand 6	D	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	398	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	330	336	parallel
Strand 5	D	433	436	parallel
Strand 6	D	347	350	anti-parallel
Strand 7	D	417	421	parallel
Strand 8	D	406	408	anti-parallel
Strand 9	D	261	268	anti-parallel
Strand 10	D	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	480	first strand
Strand 2	D	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	392	398	first strand
Strand 2	E	355	362	anti-parallel
Strand 3	E	365	370	anti-parallel
Strand 4	E	329	336	parallel
Strand 5	E	260	268	anti-parallel
Strand 6	E	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	392	398	first strand
Strand 2	E	355	362	anti-parallel
Strand 3	E	365	370	anti-parallel
Strand 4	E	329	336	parallel
Strand 5	E	433	436	parallel
Strand 6	E	347	350	anti-parallel
Strand 7	E	417	421	parallel
Strand 8	E	406	408	anti-parallel
Strand 9	E	260	268	anti-parallel
Strand 10	E	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	480	first strand
Strand 2	E	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	398	first strand
Strand 2	F	355	362	anti-parallel
Strand 3	F	365	370	anti-parallel
Strand 4	F	329	336	parallel
Strand 5	F	261	268	anti-parallel
Strand 6	F	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	398	first strand
Strand 2	F	355	362	anti-parallel
Strand 3	F	365	370	anti-parallel
Strand 4	F	329	336	parallel
Strand 5	F	433	436	parallel
Strand 6	F	347	350	anti-parallel
Strand 7	F	417	421	parallel
Strand 8	F	406	408	anti-parallel
Strand 9	F	261	268	anti-parallel
Strand 10	F	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	479	480	first strand
Strand 2	F	523	524	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PZ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZ6