Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PZ8 entry

There are 8 chains in PDB entry 3PZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ALA 84
B
 PRO 0GLU 85
C
 ASP 3ALA 84
D
 MET 2ALA 84
E
 MET 2ALA 84
F
 PRO 0ALA 84
G
 ASP 3LEU 83
H
 ASP 3GLY 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3PZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 36Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
B
24 28Right-handed 310
Helix 4
4
B
29 35Right-handed alpha
Helix 5
5
B
41 43Right-handed 310
Helix 6
6
B
72 76Right-handed 310
Helix 7
7
C
29 36Right-handed alpha
Helix 8
8
C
41 43Right-handed 310
Helix 9
9
D
29 37Right-handed alpha
Helix 10
10
E
29 36Right-handed alpha
Helix 11
11
E
41 45Right-handed 310
Helix 12
12
F
24 28Right-handed 310
Helix 13
13
F
29 37Right-handed alpha
Helix 14
14
G
29 35Right-handed alpha
Helix 15
15
G
72 76Right-handed 310
Helix 16
16
H
34 38Right-handed 310
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There are 2 sheets in PDB entry 3PZ8. Click on sheet of interest to get list of strands forming it: A, B,

There are 20 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 63first strand
Strand 2
B
45 53anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
4 9parallel
Strand 5
B
17 21anti-parallel
Strand 6
A
57 62parallel
Strand 7
A
48 53anti-parallel
Strand 8
A
77 80anti-parallel
Strand 9
A
4 9parallel
Strand 10
A
17 21anti-parallel
Strand 11
H
57 61parallel
Strand 12
H
45 53anti-parallel
Strand 13
H
76 83anti-parallel
Strand 14
H
4 8parallel
Strand 15
H
17 21anti-parallel
Strand 16
G
57 63parallel
Strand 17
G
46 53anti-parallel
Strand 18
G
77 82anti-parallel
Strand 19
G
4 10parallel
Strand 20
G
17 21anti-parallel
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There are 20 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
4 9anti-parallel
Strand 3
C
77 83parallel
Strand 4
C
45 53anti-parallel
Strand 5
C
57 62anti-parallel
Strand 6
D
17 21parallel
Strand 7
D
4 10anti-parallel
Strand 8
D
77 82parallel
Strand 9
D
46 53anti-parallel
Strand 10
D
57 63anti-parallel
Strand 11
E
17 21parallel
Strand 12
E
4 10anti-parallel
Strand 13
E
76 82parallel
Strand 14
E
46 53anti-parallel
Strand 15
E
57 63anti-parallel
Strand 16
F
17 21parallel
Strand 17
F
4 10anti-parallel
Strand 18
F
77 83parallel
Strand 19
F
45 53anti-parallel
Strand 20
F
57 63anti-parallel
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