Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PZD entry

There are 2 chains in PDB entry 3PZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1501THR 2047
B
 HIS 1408SER 1443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3PZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1504 1515Right-handed alpha
Helix 2
2
A
1519 1530Right-handed alpha
Helix 3
3
A
1531 1534Right-handed 310
Helix 4
4
A
1553 1560Right-handed alpha
Helix 5
5
A
1564 1580Right-handed alpha
Helix 6
6
A
1585 1599Right-handed alpha
Helix 7
7
A
1601 1614Right-handed alpha
Helix 8
8
A
1622 1636Right-handed alpha
Helix 9
9
A
1642 1660Right-handed alpha
Helix 10
10
A
1663 1677Right-handed alpha
Helix 11
11
A
1687 1696Right-handed alpha
Helix 12
12
A
1721 1733Right-handed alpha
Helix 13
13
A
1760 1772Right-handed alpha
Helix 14
14
A
1801 1818Right-handed alpha
Helix 15
15
A
1823 1840Right-handed alpha
Helix 16
16
A
1850 1854Right-handed 310
Helix 17
17
A
1857 1862Right-handed alpha
Helix 18
18
A
1910 1930Right-handed alpha
Helix 19
19
A
1935 1948Right-handed alpha
Helix 20
20
A
2025 2046Right-handed alpha
Helix 21
21
B
1413 1420Right-handed alpha
Helix 22
22
B
1422 1442Right-handed alpha
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There are 3 sheets in PDB entry 3PZD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1711 1716first strand
Strand 2
A
1700 1705anti-parallel
Strand 3
A
1783 1790parallel
Strand 4
A
1741 1747anti-parallel
Strand 5
A
1752 1754anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1956 1961first strand
Strand 2
A
1970 1975anti-parallel
Strand 3
A
1979 1984anti-parallel
Strand 4
A
1992 1995anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1999 2003first strand
Strand 2
A
2009 2014anti-parallel
Strand 3
A
2017 2022anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il