Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PZJ entry

There are 2 chains in PDB entry 3PZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ALA 204
B
 ALA 18ALA 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3PZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 56Right-handed alpha
Helix 2
2
A
57 62Right-handed 310
Helix 3
3
A
71 85Right-handed alpha
Helix 4
4
A
112 114Right-handed 310
Helix 5
5
A
131 148Right-handed alpha
Helix 6
6
A
161 172Right-handed alpha
Helix 7
7
A
199 204Right-handed alpha
Helix 8
8
B
42 55Right-handed alpha
Helix 9
9
B
57 62Right-handed 310
Helix 10
10
B
71 84Right-handed alpha
Helix 11
11
B
132 148Right-handed alpha
Helix 12
12
B
161 172Right-handed alpha
Helix 13
13
B
199 204Right-handed alpha
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There are 2 sheets in PDB entry 3PZJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
103 111anti-parallel
Strand 5
A
116 124anti-parallel
Strand 6
A
152 158parallel
Strand 7
A
188 198anti-parallel
Strand 8
A
174 185anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
101 111anti-parallel
Strand 5
B
116 124anti-parallel
Strand 6
B
152 158parallel
Strand 7
B
188 198anti-parallel
Strand 8
B
174 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il