Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PZP entry

There are 8 chains in PDB entry 3PZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25GLU 520
B
 MET 19ASN 518
P
 G 1 A 13
T
 C 4 C 5
T
 G 7 C 18
Q
 G 2 A 13
U
 C 4 C 5
U
 G 7 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3PZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
47 73Right-handed alpha
Helix 3
3
A
75 97Right-handed alpha
Helix 4
4
A
110 120Right-handed alpha
Helix 5
5
A
121 124Right-handed 310
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
153 161Right-handed alpha
Helix 8
8
A
170 187Right-handed alpha
Helix 9
9
A
204 212Right-handed alpha
Helix 10
10
A
289 306Right-handed alpha
Helix 11
11
A
316 326Right-handed alpha
Helix 12
12
A
338 347Right-handed alpha
Helix 13
13
A
348 349Right-handed 310
Helix 14
14
A
350 354Right-handed 310
Helix 15
15
A
358 368Right-handed alpha
Helix 16
16
A
372 387Right-handed alpha
Helix 17
17
A
388 400Right-handed alpha
Helix 18
18
A
427 448Right-handed alpha
Helix 19
19
A
480 500Right-handed alpha
Helix 20
20
B
32 45Right-handed alpha
Helix 21
21
B
47 73Right-handed alpha
Helix 22
22
B
75 95Right-handed alpha
Helix 23
23
B
110 120Right-handed alpha
Helix 24
24
B
121 124Right-handed 310
Helix 25
25
B
140 145Right-handed alpha
Helix 26
26
B
153 161Right-handed alpha
Helix 27
27
B
170 187Right-handed alpha
Helix 28
28
B
204 212Right-handed alpha
Helix 29
29
B
289 306Right-handed alpha
Helix 30
30
B
316 324Right-handed alpha
Helix 31
31
B
338 348Right-handed alpha
Helix 32
32
B
350 354Right-handed 310
Helix 33
33
B
358 368Right-handed alpha
Helix 34
34
B
372 387Right-handed alpha
Helix 35
35
B
388 400Right-handed alpha
Helix 36
36
B
429 448Right-handed alpha
Helix 37
37
B
480 498Right-handed alpha
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There are 9 sheets in PDB entry 3PZP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
332 334parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
165 167parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 425first strand
Strand 2
A
506 513anti-parallel
Strand 3
A
456 462anti-parallel
Strand 4
A
467 470anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
199 202anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
309 314anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
128 132anti-parallel
Strand 3
B
165 167parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
284 285anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
467 468anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
471 478anti-parallel
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