Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q06 entry

There are 6 chains in PDB entry 3Q06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 96GLN 354
C
 SER 96GLN 354
D
 SER 96GLN 354
B
 SER 96GLN 354
K
 T 3 T 28
L
 A 27 A 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3Q06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 108Right-handed 310
Helix 2
2
A
176 181Right-handed alpha
Helix 3
3
A
277 288Right-handed alpha
Helix 4
4
A
334 349Right-handed alpha
Helix 5
5
A
349 354Right-handed alpha
Helix 6
6
C
104 108Right-handed 310
Helix 7
7
C
176 181Right-handed alpha
Helix 8
8
C
277 288Right-handed alpha
Helix 9
9
C
288 321Right-handed alpha
Helix 10
10
C
334 349Right-handed alpha
Helix 11
11
D
104 108Right-handed 310
Helix 12
12
D
176 181Right-handed alpha
Helix 13
13
D
277 288Right-handed alpha
Helix 14
14
D
334 349Right-handed alpha
Helix 15
15
D
349 354Right-handed alpha
Helix 16
16
B
176 181Right-handed alpha
Helix 17
17
B
279 288Right-handed alpha
Helix 18
18
B
335 340Right-handed alpha
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There are 12 sheets in PDB entry 3Q06. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
195 197anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
264 275parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
156 163anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
204 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 333first strand
Strand 2
C
327 333anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
141 146anti-parallel
Strand 3
C
230 236anti-parallel
Strand 4
C
195 197anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
132 133anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
274 275parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 207first strand
Strand 2
C
214 219anti-parallel
Strand 3
C
156 163anti-parallel
Strand 4
C
251 258anti-parallel
Strand 5
C
264 272anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 112first strand
Strand 2
D
140 146anti-parallel
Strand 3
D
230 236anti-parallel
Strand 4
D
195 197anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 127first strand
Strand 2
D
132 136anti-parallel
Strand 3
D
264 275parallel
Strand 4
D
251 258anti-parallel
Strand 5
D
156 163anti-parallel
Strand 6
D
214 219anti-parallel
Strand 7
D
204 207anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
327 328first strand
Strand 2
B
332 333anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
267 272parallel
Strand 3
B
251 256anti-parallel
Strand 4
B
156 163anti-parallel
Strand 5
B
214 219anti-parallel
Strand 6
B
205 207anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
195 197anti-parallel
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