Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q0D entry

There are 5 chains in PDB entry 3Q0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLN 362TRP 524
A
 GLN 362TRP 524
B
 DT 1 DA 4
B
 DG 6 DG 10
C
 DC 1 DA 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 3Q0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
378 385Right-handed alpha
Helix 2
2
X
450 463Right-handed alpha
Helix 3
3
A
378 385Right-handed alpha
Helix 4
4
A
450 463Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3Q0D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
375 376first strand
Strand 2
X
486 499anti-parallel
Strand 3
X
466 471anti-parallel
Strand 4
X
406 412parallel
Strand 5
X
395 398anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
375 376first strand
Strand 2
X
486 499anti-parallel
Strand 3
X
509 515anti-parallel
Strand 4
X
425 429anti-parallel
Strand 5
X
419 420anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
486 499anti-parallel
Strand 3
A
466 471anti-parallel
Strand 4
A
405 412parallel
Strand 5
A
395 399anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
486 499anti-parallel
Strand 3
A
509 515anti-parallel
Strand 4
A
425 429anti-parallel
Strand 5
A
419 420anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il