Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q0I entry

There is 1 chain in PDB entry 3Q0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4SER 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3Q0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
50 59Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
122 131Right-handed alpha
Helix 6
6
A
164 189Right-handed alpha
Helix 7
7
A
198 202Right-handed 310
Helix 8
8
A
209 214Right-handed alpha
Helix 9
9
A
220 231Right-handed alpha
Helix 10
10
A
297 305Right-handed alpha
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There are 3 sheets in PDB entry 3Q0I. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
29 34parallel
Strand 3
A
6 10parallel
Strand 4
A
85 88parallel
Strand 5
A
107 111parallel
Strand 6
A
134 141anti-parallel
Strand 7
A
151 158anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 254anti-parallel
Strand 3
A
281 288anti-parallel
Strand 4
A
272 276anti-parallel
Strand 5
A
265 269anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 254anti-parallel
Strand 3
A
281 288anti-parallel
Strand 4
A
295 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il