Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3Q0J entry

There are 6 chains in PDB entry 3Q0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 255
B	SER 0	PHE 254
C	MET 1	THR 255
D	THR 2	HIS 256
E	THR 2	PHE 254
F	MET 1	PHE 254

There are 96 helices in PDB entry 3Q0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	25	Right-handed 310
Helix 2	2	A	29	46	Right-handed alpha
Helix 3	3	A	67	72	Right-handed alpha
Helix 4	4	A	74	82	Right-handed alpha
Helix 5	5	A	84	86	Right-handed 310
Helix 6	6	A	87	92	Right-handed alpha
Helix 7	7	A	107	116	Right-handed alpha
Helix 8	8	A	129	135	Right-handed 310
Helix 9	9	A	141	151	Right-handed alpha
Helix 10	10	A	151	162	Right-handed alpha
Helix 11	11	A	167	173	Right-handed alpha
Helix 12	12	A	181	183	Right-handed 310
Helix 13	13	A	184	198	Right-handed alpha
Helix 14	14	A	200	214	Right-handed alpha
Helix 15	15	A	218	233	Right-handed alpha
Helix 16	16	A	236	248	Right-handed alpha
Helix 17	17	B	21	25	Right-handed 310
Helix 18	18	B	29	46	Right-handed alpha
Helix 19	19	B	66	71	Right-handed alpha
Helix 20	20	B	74	82	Right-handed alpha
Helix 21	21	B	84	86	Right-handed 310
Helix 22	22	B	87	92	Right-handed alpha
Helix 23	23	B	107	116	Right-handed alpha
Helix 24	24	B	130	135	Right-handed 310
Helix 25	25	B	141	151	Right-handed alpha
Helix 26	26	B	151	162	Right-handed alpha
Helix 27	27	B	167	173	Right-handed alpha
Helix 28	28	B	181	183	Right-handed 310
Helix 29	29	B	184	198	Right-handed alpha
Helix 30	30	B	200	214	Right-handed alpha
Helix 31	31	B	218	234	Right-handed alpha
Helix 32	32	B	236	248	Right-handed alpha
Helix 33	33	C	21	25	Right-handed 310
Helix 34	34	C	29	46	Right-handed alpha
Helix 35	35	C	66	72	Right-handed alpha
Helix 36	36	C	74	82	Right-handed alpha
Helix 37	37	C	84	86	Right-handed 310
Helix 38	38	C	87	92	Right-handed alpha
Helix 39	39	C	107	116	Right-handed alpha
Helix 40	40	C	141	151	Right-handed alpha
Helix 41	41	C	151	162	Right-handed alpha
Helix 42	42	C	167	174	Right-handed alpha
Helix 43	43	C	181	183	Right-handed 310
Helix 44	44	C	184	198	Right-handed alpha
Helix 45	45	C	200	214	Right-handed alpha
Helix 46	46	C	218	233	Right-handed alpha
Helix 47	47	C	236	248	Right-handed alpha
Helix 48	48	D	21	25	Right-handed 310
Helix 49	49	D	29	46	Right-handed alpha
Helix 50	50	D	67	72	Right-handed alpha
Helix 51	51	D	74	82	Right-handed alpha
Helix 52	52	D	84	86	Right-handed 310
Helix 53	53	D	87	92	Right-handed alpha
Helix 54	54	D	107	116	Right-handed alpha
Helix 55	55	D	130	135	Right-handed 310
Helix 56	56	D	141	151	Right-handed alpha
Helix 57	57	D	151	162	Right-handed alpha
Helix 58	58	D	167	173	Right-handed alpha
Helix 59	59	D	181	183	Right-handed 310
Helix 60	60	D	184	198	Right-handed alpha
Helix 61	61	D	200	214	Right-handed alpha
Helix 62	62	D	218	233	Right-handed alpha
Helix 63	63	D	236	248	Right-handed alpha
Helix 64	64	E	21	25	Right-handed 310
Helix 65	65	E	29	46	Right-handed alpha
Helix 66	66	E	66	72	Right-handed alpha
Helix 67	67	E	74	82	Right-handed alpha
Helix 68	68	E	84	86	Right-handed 310
Helix 69	69	E	87	92	Right-handed alpha
Helix 70	70	E	107	116	Right-handed alpha
Helix 71	71	E	129	135	Right-handed 310
Helix 72	72	E	141	151	Right-handed alpha
Helix 73	73	E	151	162	Right-handed alpha
Helix 74	74	E	167	173	Right-handed alpha
Helix 75	75	E	181	183	Right-handed 310
Helix 76	76	E	184	198	Right-handed alpha
Helix 77	77	E	200	214	Right-handed alpha
Helix 78	78	E	218	234	Right-handed alpha
Helix 79	79	E	236	248	Right-handed alpha
Helix 80	80	F	21	25	Right-handed 310
Helix 81	81	F	29	46	Right-handed alpha
Helix 82	82	F	66	72	Right-handed alpha
Helix 83	83	F	74	82	Right-handed alpha
Helix 84	84	F	84	86	Right-handed 310
Helix 85	85	F	87	92	Right-handed alpha
Helix 86	86	F	107	116	Right-handed alpha
Helix 87	87	F	129	135	Right-handed 310
Helix 88	88	F	141	151	Right-handed alpha
Helix 89	89	F	151	162	Right-handed alpha
Helix 90	90	F	167	173	Right-handed alpha
Helix 91	91	F	181	183	Right-handed 310
Helix 92	92	F	184	198	Right-handed alpha
Helix 93	93	F	200	213	Right-handed alpha
Helix 94	94	F	214	216	Right-handed 310
Helix 95	95	F	218	234	Right-handed alpha
Helix 96	96	F	236	248	Right-handed alpha

There are 12 sheets in PDB entry 3Q0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	51	55	parallel
Strand 4	A	97	101	parallel
Strand 5	A	118	122	parallel
Strand 6	A	178	180	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	104	106	parallel
Strand 3	A	126	128	parallel
Strand 4	A	165	166	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	14	19	anti-parallel
Strand 3	B	51	55	parallel
Strand 4	B	97	101	parallel
Strand 5	B	118	122	parallel
Strand 6	B	178	180	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	104	106	parallel
Strand 3	B	126	128	parallel
Strand 4	B	164	166	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	14	19	anti-parallel
Strand 3	C	51	55	parallel
Strand 4	C	97	101	parallel
Strand 5	C	118	122	parallel
Strand 6	C	178	180	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	104	106	parallel
Strand 3	C	126	128	parallel
Strand 4	C	164	166	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	14	19	anti-parallel
Strand 3	D	51	55	parallel
Strand 4	D	97	101	parallel
Strand 5	D	118	122	parallel
Strand 6	D	178	180	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	104	106	parallel
Strand 3	D	126	128	parallel
Strand 4	D	165	166	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	14	19	anti-parallel
Strand 3	E	51	55	parallel
Strand 4	E	97	101	parallel
Strand 5	E	118	122	parallel
Strand 6	E	178	180	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	104	106	parallel
Strand 3	E	126	128	parallel
Strand 4	E	165	166	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	14	19	anti-parallel
Strand 3	F	51	55	parallel
Strand 4	F	97	101	parallel
Strand 5	F	118	122	parallel
Strand 6	F	178	180	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	104	106	parallel
Strand 3	F	126	128	parallel
Strand 4	F	165	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3Q0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q0J