Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q0Y entry

There are 6 chains in PDB entry 3Q0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15ASN 159
B
 THR 14GLY 158
C
 GLN 13ASN 159
D
 ALA 21ASN 159
E
 THR 14ASN 159
F
 THR 14ASN 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3Q0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
84 93Right-handed alpha
Helix 3
3
A
98 100Right-handed 310
Helix 4
4
A
101 116Right-handed alpha
Helix 5
5
B
17 21Right-handed 310
Helix 6
6
B
83 93Right-handed alpha
Helix 7
7
B
101 116Right-handed alpha
Helix 8
8
C
17 21Right-handed 310
Helix 9
9
C
83 93Right-handed alpha
Helix 10
10
C
101 116Right-handed alpha
Helix 11
11
D
83 93Right-handed alpha
Helix 12
12
D
101 116Right-handed alpha
Helix 13
13
E
83 94Right-handed alpha
Helix 14
14
E
101 116Right-handed alpha
Helix 15
15
F
17 21Right-handed 310
Helix 16
16
F
83 93Right-handed alpha
Helix 17
17
F
101 116Right-handed alpha
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There are 6 sheets in PDB entry 3Q0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 34first strand
Strand 2
A
41 54anti-parallel
Strand 3
A
57 68anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
147 157anti-parallel
Strand 6
A
134 142anti-parallel
Strand 7
A
123 131anti-parallel
Strand 8
A
22 34parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 35first strand
Strand 2
B
41 54anti-parallel
Strand 3
B
57 68anti-parallel
Strand 4
B
77 82anti-parallel
Strand 5
B
147 157anti-parallel
Strand 6
B
134 142anti-parallel
Strand 7
B
123 131anti-parallel
Strand 8
B
22 35parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 35first strand
Strand 2
C
41 53anti-parallel
Strand 3
C
61 69anti-parallel
Strand 4
C
72 82anti-parallel
Strand 5
C
147 157anti-parallel
Strand 6
C
134 142anti-parallel
Strand 7
C
123 131anti-parallel
Strand 8
C
22 35parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 35first strand
Strand 2
D
41 53anti-parallel
Strand 3
D
61 68anti-parallel
Strand 4
D
76 82anti-parallel
Strand 5
D
147 157anti-parallel
Strand 6
D
134 142anti-parallel
Strand 7
D
123 131anti-parallel
Strand 8
D
22 35parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 35first strand
Strand 2
E
41 54anti-parallel
Strand 3
E
57 69anti-parallel
Strand 4
E
72 82anti-parallel
Strand 5
E
147 157anti-parallel
Strand 6
E
134 142anti-parallel
Strand 7
E
123 131anti-parallel
Strand 8
E
22 35parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 35first strand
Strand 2
F
41 53anti-parallel
Strand 3
F
61 68anti-parallel
Strand 4
F
76 82anti-parallel
Strand 5
F
147 157anti-parallel
Strand 6
F
134 142anti-parallel
Strand 7
F
123 131anti-parallel
Strand 8
F
22 35parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il