Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q1P entry

There are 2 chains in PDB entry 3Q1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASP 205
B
 THR 2ASP 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3Q1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 23Right-handed alpha
Helix 2
2
A
25 47Right-handed alpha
Helix 3
3
A
50 59Right-handed alpha
Helix 4
4
A
104 118Right-handed alpha
Helix 5
5
A
132 136Right-handed alpha
Helix 6
6
A
184 197Right-handed alpha
Helix 7
7
B
4 23Right-handed alpha
Helix 8
8
B
25 44Right-handed alpha
Helix 9
9
B
104 118Right-handed alpha
Helix 10
10
B
133 135Right-handed 310
Helix 11
11
B
184 197Right-handed alpha
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There are 4 sheets in PDB entry 3Q1P. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
167 170first strand
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
68 77anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
144 156first strand
Strand 5
A
119 131anti-parallel
Strand 6
A
203 204parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
68 77anti-parallel
Strand 4
B
166 170first strand
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
68 77anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
144 156first strand
Strand 5
B
119 131anti-parallel
Strand 6
B
203 204parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il