Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q1T entry

There are 6 chains in PDB entry 3Q1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10PHE 268
B
 VAL 9ALA 259
C
 VAL 9PHE 268
D
 VAL 9THR 269
E
 VAL 9HIS 260
F
 ASP 10TYR 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 3Q1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 38Right-handed alpha
Helix 2
2
A
40 57Right-handed alpha
Helix 3
3
A
77 87Right-handed alpha
Helix 4
4
A
87 107Right-handed alpha
Helix 5
5
A
122 131Right-handed alpha
Helix 6
6
A
156 177Right-handed alpha
Helix 7
7
A
182 188Right-handed alpha
Helix 8
8
A
196 198Right-handed 310
Helix 9
9
A
199 213Right-handed alpha
Helix 10
10
A
215 232Right-handed alpha
Helix 11
11
A
233 248Right-handed alpha
Helix 12
12
A
250 259Right-handed alpha
Helix 13
13
B
10 14Right-handed 310
Helix 14
14
B
33 38Right-handed alpha
Helix 15
15
B
40 55Right-handed alpha
Helix 16
16
B
77 87Right-handed alpha
Helix 17
17
B
87 107Right-handed alpha
Helix 18
18
B
122 131Right-handed alpha
Helix 19
19
B
145 150Right-handed alpha
Helix 20
20
B
156 160Right-handed 310
Helix 21
21
B
161 177Right-handed alpha
Helix 22
22
B
182 189Right-handed alpha
Helix 23
23
B
196 198Right-handed 310
Helix 24
24
B
199 213Right-handed alpha
Helix 25
25
B
215 232Right-handed alpha
Helix 26
26
B
233 248Right-handed alpha
Helix 27
27
B
251 259Right-handed alpha
Helix 28
28
C
10 14Right-handed 310
Helix 29
29
C
33 38Right-handed alpha
Helix 30
30
C
40 56Right-handed alpha
Helix 31
31
C
77 87Right-handed alpha
Helix 32
32
C
87 107Right-handed alpha
Helix 33
33
C
122 131Right-handed alpha
Helix 34
34
C
145 150Right-handed alpha
Helix 35
35
C
156 161Right-handed alpha
Helix 36
36
C
161 166Right-handed alpha
Helix 37
37
C
166 177Right-handed alpha
Helix 38
38
C
182 188Right-handed alpha
Helix 39
39
C
196 198Right-handed 310
Helix 40
40
C
199 214Right-handed alpha
Helix 41
41
C
215 232Right-handed alpha
Helix 42
42
C
233 248Right-handed alpha
Helix 43
43
C
250 262Right-handed alpha
Helix 44
44
D
33 38Right-handed alpha
Helix 45
45
D
40 56Right-handed alpha
Helix 46
46
D
77 87Right-handed alpha
Helix 47
47
D
87 108Right-handed alpha
Helix 48
48
D
122 131Right-handed alpha
Helix 49
49
D
145 150Right-handed alpha
Helix 50
50
D
156 161Right-handed alpha
Helix 51
51
D
161 166Right-handed alpha
Helix 52
52
D
166 177Right-handed alpha
Helix 53
53
D
182 188Right-handed alpha
Helix 54
54
D
196 198Right-handed 310
Helix 55
55
D
199 213Right-handed alpha
Helix 56
56
D
215 232Right-handed alpha
Helix 57
57
D
233 248Right-handed alpha
Helix 58
58
D
250 262Right-handed alpha
Helix 59
59
E
10 14Right-handed 310
Helix 60
60
E
33 38Right-handed alpha
Helix 61
61
E
40 56Right-handed alpha
Helix 62
62
E
77 87Right-handed alpha
Helix 63
63
E
87 107Right-handed alpha
Helix 64
64
E
122 130Right-handed alpha
Helix 65
65
E
145 150Right-handed alpha
Helix 66
66
E
156 166Right-handed alpha
Helix 67
67
E
166 177Right-handed alpha
Helix 68
68
E
182 189Right-handed alpha
Helix 69
69
E
196 198Right-handed 310
Helix 70
70
E
199 213Right-handed alpha
Helix 71
71
E
215 232Right-handed alpha
Helix 72
72
E
233 248Right-handed alpha
Helix 73
73
E
251 260Right-handed alpha
Helix 74
74
F
33 37Right-handed alpha
Helix 75
75
F
40 57Right-handed alpha
Helix 76
76
F
77 87Right-handed alpha
Helix 77
77
F
87 107Right-handed alpha
Helix 78
78
F
122 131Right-handed alpha
Helix 79
79
F
145 150Right-handed alpha
Helix 80
80
F
156 161Right-handed alpha
Helix 81
81
F
161 177Right-handed alpha
Helix 82
82
F
182 188Right-handed alpha
Helix 83
83
F
199 214Right-handed alpha
Helix 84
84
F
215 232Right-handed alpha
Helix 85
85
F
233 248Right-handed alpha
Helix 86
86
F
251 262Right-handed alpha
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There are 13 sheets in PDB entry 3Q1T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
62 67parallel
Strand 4
A
112 116parallel
Strand 5
A
133 137parallel
Strand 6
A
193 195parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
141 143parallel
Strand 3
A
180 181anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
62 67parallel
Strand 4
B
112 116parallel
Strand 5
B
133 137parallel
Strand 6
B
193 195parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
141 143parallel
Strand 3
B
180 181anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
26 31anti-parallel
Strand 3
C
62 67parallel
Strand 4
C
112 116parallel
Strand 5
C
133 137parallel
Strand 6
C
193 195parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
141 143parallel
Strand 3
C
180 181anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 21first strand
Strand 2
D
26 31anti-parallel
Strand 3
D
62 67parallel
Strand 4
D
112 116parallel
Strand 5
D
133 137parallel
Strand 6
D
193 195parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 121first strand
Strand 2
D
141 143parallel
Strand 3
D
180 181anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 21first strand
Strand 2
E
26 31anti-parallel
Strand 3
E
62 67parallel
Strand 4
E
112 116parallel
Strand 5
E
133 137parallel
Strand 6
E
193 195parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 121first strand
Strand 2
E
141 143parallel
Strand 3
E
180 181anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 21first strand
Strand 2
F
26 31anti-parallel
Strand 3
F
62 67parallel
Strand 4
F
112 116parallel
Strand 5
F
133 137parallel
Strand 6
F
193 195parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 39first strand
Strand 2
F
75 76parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 121first strand
Strand 2
F
141 143parallel
Strand 3
F
180 181anti-parallel
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