Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q2M entry

There is 1 chain in PDB entry 3Q2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLN 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3Q2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 19Right-handed alpha
Helix 2
2
A
62 73Right-handed alpha
Helix 3
3
A
114 131Right-handed alpha
Helix 4
4
A
134 139Right-handed alpha
Helix 5
5
A
148 158Right-handed alpha
Helix 6
6
A
159 161Right-handed 310
Helix 7
7
A
168 181Right-handed alpha
Helix 8
8
A
181 199Right-handed alpha
Helix 9
9
A
214 216Right-handed 310
Helix 10
10
A
239 244Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
256 268Right-handed alpha
Helix 13
13
A
273 296Right-handed alpha
Helix 14
14
A
299 303Right-handed 310
Helix 15
15
A
305 316Right-handed alpha
Helix 16
16
A
321 328Right-handed alpha
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There are 3 sheets in PDB entry 3Q2M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
48 54anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
90 92anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
235 238parallel
Strand 3
A
206 209anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
226 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il