Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q35 entry

There are 3 chains in PDB entry 3Q35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 289
A
 ALA 291HIS 404
B
 ASN 9GLU 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3Q35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
99 114Right-handed alpha
Helix 3
3
A
117 121Right-handed 310
Helix 4
4
A
143 158Right-handed alpha
Helix 5
5
A
203 207Right-handed 310
Helix 6
6
A
214 233Right-handed alpha
Helix 7
7
A
248 257Right-handed alpha
Helix 8
8
A
277 281Right-handed 310
Helix 9
9
A
288 300Right-handed alpha
Helix 10
10
A
307 317Right-handed alpha
Helix 11
11
A
354 367Right-handed alpha
Helix 12
12
A
372 392Right-handed alpha
Helix 13
13
B
9 52Right-handed alpha
Helix 14
14
B
56 65Right-handed alpha
Helix 15
15
B
66 71Right-handed 310
Helix 16
16
B
73 75Right-handed 310
Helix 17
17
B
76 81Right-handed alpha
Helix 18
18
B
92 94Right-handed 310
Helix 19
19
B
150 154Right-handed 310
Helix 20
20
B
156 160Right-handed 310
Helix 21
21
B
165 176Right-handed alpha
Helix 22
22
B
177 178Right-handed 310
Helix 23
23
B
179 183Right-handed 310
Helix 24
24
B
196 207Right-handed alpha
Helix 25
25
B
207 220Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3Q35. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
45 56anti-parallel
Strand 3
A
61 73anti-parallel
Strand 4
A
79 90anti-parallel
Strand 5
A
186 193parallel
Strand 6
A
328 334anti-parallel
Strand 7
A
239 243anti-parallel
Strand 8
A
265 266parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
45 56anti-parallel
Strand 3
A
16 23anti-parallel
Strand 4
A
396 399anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 90first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
138 141anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il