Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q41 entry

There are 3 chains in PDB entry 3Q41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24VAL 394
B
 PRO 24ARG 390
C
 PRO 24VAL 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3Q41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 51Right-handed alpha
Helix 2
2
A
70 81Right-handed alpha
Helix 3
3
A
82 85Right-handed 310
Helix 4
4
A
103 113Right-handed alpha
Helix 5
5
A
125 130Right-handed 310
Helix 6
6
A
143 145Right-handed 310
Helix 7
7
A
146 157Right-handed alpha
Helix 8
8
A
158 160Right-handed 310
Helix 9
9
A
170 186Right-handed alpha
Helix 10
10
A
204 213Right-handed alpha
Helix 11
11
A
224 238Right-handed alpha
Helix 12
12
A
276 297Right-handed alpha
Helix 13
13
A
316 327Right-handed alpha
Helix 14
14
B
35 54Right-handed alpha
Helix 15
15
B
70 81Right-handed alpha
Helix 16
16
B
82 85Right-handed 310
Helix 17
17
B
103 113Right-handed alpha
Helix 18
18
B
125 130Right-handed 310
Helix 19
19
B
143 145Right-handed 310
Helix 20
20
B
146 158Right-handed alpha
Helix 21
21
B
170 185Right-handed alpha
Helix 22
22
B
204 213Right-handed alpha
Helix 23
23
B
224 237Right-handed alpha
Helix 24
24
B
256 261Right-handed alpha
Helix 25
25
B
276 296Right-handed alpha
Helix 26
26
B
317 327Right-handed alpha
Helix 27
27
C
35 48Right-handed alpha
Helix 28
28
C
72 82Right-handed alpha
Helix 29
29
C
83 85Right-handed 310
Helix 30
30
C
103 113Right-handed alpha
Helix 31
31
C
125 129Right-handed 310
Helix 32
32
C
144 146Right-handed 310
Helix 33
33
C
147 157Right-handed alpha
Helix 34
34
C
170 186Right-handed alpha
Helix 35
35
C
204 213Right-handed alpha
Helix 36
36
C
224 237Right-handed alpha
Helix 37
37
C
256 262Right-handed alpha
Helix 38
38
C
276 296Right-handed alpha
Helix 39
39
C
316 327Right-handed alpha
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There are 14 sheets in PDB entry 3Q41. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 66first strand
Strand 2
A
26 33parallel
Strand 3
A
87 92parallel
Strand 4
A
118 120parallel
Strand 5
A
137 139parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
163 168parallel
Strand 3
A
218 222parallel
Strand 4
A
246 248parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
360 363anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
338 339anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
372 374anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 66first strand
Strand 2
B
25 33parallel
Strand 3
B
87 92parallel
Strand 4
B
118 120parallel
Strand 5
B
137 139parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 196first strand
Strand 2
B
162 167parallel
Strand 3
B
218 221parallel
Strand 4
B
246 248parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
360 361anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
365 368anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
338 340anti-parallel
Strand 3
B
346 347anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
28 33parallel
Strand 3
C
87 92parallel
Strand 4
C
118 120parallel
Strand 5
C
137 139parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
164 168parallel
Strand 3
C
218 222parallel
Strand 4
C
246 249parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 271first strand
Strand 2
C
351 357anti-parallel
Strand 3
C
360 368anti-parallel
Strand 4
C
371 374anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
338 339anti-parallel
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