Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q5T entry

There is 1 chain in PDB entry 3Q5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3Q5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
A
116 120Right-handed 310
Helix 3
3
A
131 139Right-handed alpha
Helix 4
4
A
194 198Right-handed alpha
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There are 6 sheets in PDB entry 3Q5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
66 69anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
109 114parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
54 57anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
109 114parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
104 105anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
183 193anti-parallel
Strand 4
A
170 172anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
183 193anti-parallel
Strand 4
A
177 180anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
229 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il