Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q60 entry

There is 1 chain in PDB entry 3Q60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 176SER 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3Q60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
177 188Right-handed alpha
Helix 2
2
A
188 200Right-handed alpha
Helix 3
3
A
203 215Right-handed alpha
Helix 4
4
A
271 291Right-handed alpha
Helix 5
5
A
344 354Right-handed alpha
Helix 6
6
A
358 383Right-handed alpha
Helix 7
7
A
391 393Right-handed 310
Helix 8
8
A
407 409Right-handed 310
Helix 9
9
A
421 423Right-handed 310
Helix 10
10
A
424 428Right-handed 310
Helix 11
11
A
429 434Right-handed alpha
Helix 12
12
A
441 459Right-handed alpha
Helix 13
13
A
496 507Right-handed alpha
Helix 14
14
A
516 521Right-handed alpha
Helix 15
15
A
523 538Right-handed alpha
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There are 4 sheets in PDB entry 3Q60. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 242anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
330 337anti-parallel
Strand 6
A
308 312anti-parallel
Strand 7
A
220 225anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
411 413anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
437 439anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il