Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q63 entry

There are 6 chains in PDB entry 3Q63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9ASP 140
B
 ASN 8LEU 144
C
 ASN 8LEU 144
D
 ARG 9LEU 144
E
 GLU 7ARG 141
F
 THR 6LEU 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3Q63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
117 140Right-handed alpha
Helix 4
4
B
20 30Right-handed alpha
Helix 5
5
B
30 38Right-handed alpha
Helix 6
6
B
117 142Right-handed alpha
Helix 7
7
C
20 30Right-handed alpha
Helix 8
8
C
30 38Right-handed alpha
Helix 9
9
C
117 141Right-handed alpha
Helix 10
10
D
20 30Right-handed alpha
Helix 11
11
D
30 38Right-handed alpha
Helix 12
12
D
117 141Right-handed alpha
Helix 13
13
E
20 30Right-handed alpha
Helix 14
14
E
30 38Right-handed alpha
Helix 15
15
E
117 141Right-handed alpha
Helix 16
16
F
20 30Right-handed alpha
Helix 17
17
F
30 38Right-handed alpha
Helix 18
18
F
117 142Right-handed alpha
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There are 7 sheets in PDB entry 3Q63. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 17first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
73 77anti-parallel
Strand 5
A
60 69anti-parallel
Strand 6
A
50 54anti-parallel
Strand 7
A
40 41anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 17first strand
Strand 2
B
103 113anti-parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
73 77anti-parallel
Strand 5
B
60 69anti-parallel
Strand 6
B
50 54anti-parallel
Strand 7
B
40 41anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 17first strand
Strand 2
C
103 111anti-parallel
Strand 3
C
89 100anti-parallel
Strand 4
C
73 80anti-parallel
Strand 5
C
60 69anti-parallel
Strand 6
C
50 54anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 17first strand
Strand 2
D
104 111anti-parallel
Strand 3
D
89 99anti-parallel
Strand 4
D
73 80anti-parallel
Strand 5
D
60 69anti-parallel
Strand 6
D
50 54anti-parallel
Strand 7
D
40 41anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 11first strand
Strand 2
E
110 113anti-parallel
Strand 3
E
92 100anti-parallel
Strand 4
E
103 107anti-parallel
Strand 5
E
14 17anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 11first strand
Strand 2
E
110 113anti-parallel
Strand 3
E
92 100anti-parallel
Strand 4
E
73 77anti-parallel
Strand 5
E
60 69anti-parallel
Strand 6
E
50 54anti-parallel
Strand 7
E
40 41anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 17first strand
Strand 2
F
103 113anti-parallel
Strand 3
F
89 100anti-parallel
Strand 4
F
73 80anti-parallel
Strand 5
F
60 69anti-parallel
Strand 6
F
50 54anti-parallel
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