Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q68 entry

There are 4 chains in PDB entry 3Q68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8SER 253
C
 ASN -1PRO 289
C
 ALA 291GLU 403
B
 SER 3LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3Q68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 54Right-handed alpha
Helix 2
2
A
56 65Right-handed alpha
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
76 81Right-handed alpha
Helix 6
6
A
92 94Right-handed 310
Helix 7
7
A
149 156Right-handed 310
Helix 8
8
A
165 176Right-handed alpha
Helix 9
9
A
178 183Right-handed alpha
Helix 10
10
A
196 207Right-handed alpha
Helix 11
11
A
211 219Right-handed alpha
Helix 12
12
A
223 227Right-handed 310
Helix 13
13
C
2 10Right-handed alpha
Helix 14
14
C
99 114Right-handed alpha
Helix 15
15
C
115 121Right-handed 310
Helix 16
16
C
143 159Right-handed alpha
Helix 17
17
C
163 167Right-handed 310
Helix 18
18
C
168 176Right-handed alpha
Helix 19
19
C
203 207Right-handed 310
Helix 20
20
C
214 234Right-handed alpha
Helix 21
21
C
248 258Right-handed alpha
Helix 22
22
C
288 300Right-handed alpha
Helix 23
23
C
307 318Right-handed alpha
Helix 24
24
C
354 367Right-handed alpha
Helix 25
25
C
372 392Right-handed alpha
Helix 26
26
B
3 53Right-handed alpha
Helix 27
27
B
56 65Right-handed alpha
Helix 28
28
B
66 70Right-handed 310
Helix 29
29
B
73 81Right-handed alpha
Helix 30
30
B
92 94Right-handed 310
Helix 31
31
B
150 154Right-handed 310
Helix 32
32
B
165 177Right-handed alpha
Helix 33
33
B
178 184Right-handed alpha
Helix 34
34
B
196 207Right-handed alpha
Helix 35
35
B
211 223Right-handed alpha
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There are 4 sheets in PDB entry 3Q68. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
119 128anti-parallel
Strand 4
A
138 141anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
43 57anti-parallel
Strand 3
C
60 74anti-parallel
Strand 4
C
79 90anti-parallel
Strand 5
C
186 193parallel
Strand 6
C
328 334anti-parallel
Strand 7
C
239 243anti-parallel
Strand 8
C
265 266parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
43 57anti-parallel
Strand 3
C
16 23anti-parallel
Strand 4
C
396 399anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 90first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
138 141anti-parallel
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