Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3Q6D entry

There are 4 chains in PDB entry 3Q6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -1	LEU 353
B	ASN -1	LEU 353
C	ALA 0	ILE 352
D	MET 1	SER 199

There are 55 helices in PDB entry 3Q6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-1	9	Right-handed alpha
Helix 2	2	A	10	15	Right-handed alpha
Helix 3	3	A	23	32	Right-handed alpha
Helix 4	4	A	52	54	Right-handed 310
Helix 5	5	A	55	63	Right-handed alpha
Helix 6	6	A	74	87	Right-handed alpha
Helix 7	7	A	99	110	Right-handed alpha
Helix 8	8	A	119	126	Right-handed alpha
Helix 9	9	A	129	151	Right-handed alpha
Helix 10	10	A	159	174	Right-handed alpha
Helix 11	11	A	189	193	Right-handed 310
Helix 12	12	A	234	255	Right-handed alpha
Helix 13	13	A	260	275	Right-handed alpha
Helix 14	14	A	277	281	Right-handed 310
Helix 15	15	B	-1	10	Right-handed alpha
Helix 16	16	B	10	15	Right-handed alpha
Helix 17	17	B	23	32	Right-handed alpha
Helix 18	18	B	52	54	Right-handed 310
Helix 19	19	B	55	63	Right-handed alpha
Helix 20	20	B	74	87	Right-handed alpha
Helix 21	21	B	99	110	Right-handed alpha
Helix 22	22	B	119	126	Right-handed alpha
Helix 23	23	B	129	151	Right-handed alpha
Helix 24	24	B	159	174	Right-handed alpha
Helix 25	25	B	189	193	Right-handed 310
Helix 26	26	B	234	255	Right-handed alpha
Helix 27	27	B	260	275	Right-handed alpha
Helix 28	28	B	277	281	Right-handed 310
Helix 29	29	C	0	10	Right-handed alpha
Helix 30	30	C	10	15	Right-handed alpha
Helix 31	31	C	23	31	Right-handed alpha
Helix 32	32	C	52	54	Right-handed 310
Helix 33	33	C	55	63	Right-handed alpha
Helix 34	34	C	74	87	Right-handed alpha
Helix 35	35	C	99	108	Right-handed alpha
Helix 36	36	C	119	126	Right-handed alpha
Helix 37	37	C	129	154	Right-handed alpha
Helix 38	38	C	159	174	Right-handed alpha
Helix 39	39	C	189	193	Right-handed 310
Helix 40	40	C	234	255	Right-handed alpha
Helix 41	41	C	260	275	Right-handed alpha
Helix 42	42	C	277	281	Right-handed 310
Helix 43	43	D	1	15	Right-handed alpha
Helix 44	44	D	23	32	Right-handed alpha
Helix 45	45	D	52	54	Right-handed 310
Helix 46	46	D	55	63	Right-handed alpha
Helix 47	47	D	74	86	Right-handed alpha
Helix 48	48	D	99	110	Right-handed alpha
Helix 49	49	D	119	127	Right-handed alpha
Helix 50	50	D	129	151	Right-handed alpha
Helix 51	51	D	159	174	Right-handed alpha
Helix 52	52	D	189	193	Right-handed 310
Helix 53	53	D	234	255	Right-handed alpha
Helix 54	54	D	260	275	Right-handed alpha
Helix 55	55	D	277	281	Right-handed 310

There are 24 sheets in PDB entry 3Q6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	47	51	parallel
Strand 3	A	39	43	anti-parallel
Strand 4	A	18	21	anti-parallel
Strand 5	A	90	94	parallel
Strand 6	A	113	117	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	215	217	anti-parallel
Strand 3	A	220	221	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	224	229	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	295	299	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	340	342	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	325	328	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	47	51	parallel
Strand 3	B	39	43	anti-parallel
Strand 4	B	18	21	anti-parallel
Strand 5	B	90	94	parallel
Strand 6	B	113	117	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	215	217	anti-parallel
Strand 3	B	220	221	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	207	213	anti-parallel
Strand 3	B	224	230	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	288	first strand
Strand 2	B	295	299	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	340	342	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	325	328	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	47	51	parallel
Strand 3	C	39	43	anti-parallel
Strand 4	C	18	21	anti-parallel
Strand 5	C	90	94	parallel
Strand 6	C	113	117	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	215	217	anti-parallel
Strand 3	C	220	221	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	207	213	anti-parallel
Strand 3	C	224	230	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	288	first strand
Strand 2	C	295	299	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	331	335	anti-parallel
Strand 3	C	340	342	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	321	first strand
Strand 2	C	325	328	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	47	50	parallel
Strand 3	D	39	43	anti-parallel
Strand 4	D	18	21	anti-parallel
Strand 5	D	90	94	parallel
Strand 6	D	113	117	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	215	217	anti-parallel
Strand 3	D	220	221	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	208	213	anti-parallel
Strand 3	D	224	229	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	288	first strand
Strand 2	D	295	299	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	315	first strand
Strand 2	D	331	335	anti-parallel
Strand 3	D	340	342	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	321	first strand
Strand 2	D	325	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3Q6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q6D