Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q7J entry

There are 2 chains in PDB entry 3Q7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 780
B
 MET 1LYS 780
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3Q7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 108Right-handed 310
Helix 2
2
A
159 163Right-handed 310
Helix 3
3
A
193 211Right-handed alpha
Helix 4
4
A
243 245Right-handed 310
Helix 5
5
A
254 270Right-handed alpha
Helix 6
6
A
280 282Right-handed 310
Helix 7
7
A
283 303Right-handed alpha
Helix 8
8
A
304 306Right-handed 310
Helix 9
9
A
307 316Right-handed alpha
Helix 10
10
A
316 324Right-handed alpha
Helix 11
11
A
351 366Right-handed alpha
Helix 12
12
A
366 381Right-handed alpha
Helix 13
13
A
387 400Right-handed alpha
Helix 14
14
A
402 413Right-handed alpha
Helix 15
15
A
478 481Right-handed 310
Helix 16
16
A
489 499Right-handed alpha
Helix 17
17
A
504 522Right-handed alpha
Helix 18
18
A
525 535Right-handed alpha
Helix 19
19
A
536 539Right-handed 310
Helix 20
20
A
541 556Right-handed alpha
Helix 21
21
A
562 578Right-handed alpha
Helix 22
22
A
582 600Right-handed alpha
Helix 23
23
A
600 610Right-handed alpha
Helix 24
24
A
611 612Right-handed 310
Helix 25
25
A
613 617Right-handed 310
Helix 26
26
A
618 634Right-handed alpha
Helix 27
27
A
635 645Right-handed alpha
Helix 28
28
A
648 660Right-handed alpha
Helix 29
29
A
664 677Right-handed alpha
Helix 30
30
A
684 693Right-handed alpha
Helix 31
31
A
695 705Right-handed alpha
Helix 32
32
A
705 718Right-handed alpha
Helix 33
33
A
721 735Right-handed alpha
Helix 34
34
A
739 748Right-handed alpha
Helix 35
35
A
753 779Right-handed alpha
Helix 36
36
B
104 108Right-handed 310
Helix 37
37
B
159 163Right-handed 310
Helix 38
38
B
193 211Right-handed alpha
Helix 39
39
B
242 246Right-handed alpha
Helix 40
40
B
252 269Right-handed alpha
Helix 41
41
B
280 282Right-handed 310
Helix 42
42
B
283 303Right-handed alpha
Helix 43
43
B
307 316Right-handed alpha
Helix 44
44
B
316 324Right-handed alpha
Helix 45
45
B
347 366Right-handed alpha
Helix 46
46
B
366 382Right-handed alpha
Helix 47
47
B
387 400Right-handed alpha
Helix 48
48
B
402 413Right-handed alpha
Helix 49
49
B
478 481Right-handed 310
Helix 50
50
B
489 498Right-handed alpha
Helix 51
51
B
499 503Right-handed 310
Helix 52
52
B
504 522Right-handed alpha
Helix 53
53
B
525 535Right-handed alpha
Helix 54
54
B
541 559Right-handed alpha
Helix 55
55
B
562 577Right-handed alpha
Helix 56
56
B
582 600Right-handed alpha
Helix 57
57
B
600 609Right-handed alpha
Helix 58
58
B
610 614Right-handed 310
Helix 59
59
B
618 633Right-handed alpha
Helix 60
60
B
635 643Right-handed alpha
Helix 61
61
B
648 661Right-handed alpha
Helix 62
62
B
666 673Right-handed alpha
Helix 63
63
B
684 692Right-handed alpha
Helix 64
64
B
695 705Right-handed alpha
Helix 65
65
B
705 718Right-handed alpha
Helix 66
66
B
721 735Right-handed alpha
Helix 67
67
B
740 748Right-handed alpha
Helix 68
68
B
753 775Right-handed alpha
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There are 18 sheets in PDB entry 3Q7J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
69 78anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
3 13anti-parallel
Strand 5
A
119 127parallel
Strand 6
A
148 152anti-parallel
Strand 7
A
139 144anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
69 78anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
3 13anti-parallel
Strand 5
A
119 127parallel
Strand 6
A
157 158anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
54 55anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
95 99anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
165 168anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
218 224parallel
Strand 4
A
237 241parallel
Strand 5
A
231 232anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
384 386parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
466 469anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
417 424anti-parallel
Strand 4
A
485 487parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 462first strand
Strand 2
A
447 453anti-parallel
Strand 3
A
473 476anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
18 27anti-parallel
Strand 5
B
3 13anti-parallel
Strand 6
B
120 128parallel
Strand 7
B
147 152anti-parallel
Strand 8
B
139 144anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
54 55anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
95 99anti-parallel
Strand 3
B
165 168anti-parallel
Strand 4
B
132 135anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 177first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
218 224parallel
Strand 4
B
237 241parallel
Strand 5
B
231 232anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
384 386parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 442first strand
Strand 2
B
427 436anti-parallel
Strand 3
B
466 469anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 442first strand
Strand 2
B
427 436anti-parallel
Strand 3
B
417 420anti-parallel
Strand 4
B
485 487parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 462first strand
Strand 2
B
447 453anti-parallel
Strand 3
B
473 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il