Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q8F entry

There are 8 chains in PDB entry 3Q8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16ASN 85
A
 VAL 87ARG 252
A
 PRO 254VAL 262
A
 VAL 264THR 298
A
 THR 300ASP 335
A
 SER 337PHE 596
A
 TYR 598ALA 615
A
 ARG 617ILE 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3Q8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 50Right-handed 310
Helix 2
2
A
184 191Right-handed alpha
Helix 3
3
A
234 241Right-handed alpha
Helix 4
4
A
248 253Right-handed 310
Helix 5
5
A
345 350Right-handed alpha
Helix 6
6
A
436 446Right-handed alpha
Helix 7
7
A
477 487Right-handed alpha
Helix 8
8
A
512 516Right-handed 310
Helix 9
9
A
523 532Right-handed alpha
Helix 10
10
A
555 569Right-handed alpha
Helix 11
11
A
573 580Right-handed 310
Helix 12
12
A
608 615Right-handed alpha
Helix 13
13
A
632 638Right-handed alpha
Helix 14
14
A
704 706Right-handed 310
Helix 15
15
A
732 734Right-handed 310
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There are 14 sheets in PDB entry 3Q8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
114 121anti-parallel
Strand 5
A
87 91anti-parallel
Strand 6
A
95 97anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
151 152anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
106 108anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
143 145anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
201 205anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 394first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
447 452anti-parallel
Strand 4
A
328 334anti-parallel
Strand 5
A
288 297anti-parallel
Strand 6
A
262 273anti-parallel
Strand 7
A
357 368anti-parallel
Strand 8
A
419 420anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
357 368anti-parallel
Strand 3
A
433 435anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 463first strand
Strand 2
A
468 476anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 506first strand
Strand 2
A
488 493anti-parallel
Strand 3
A
588 593parallel
Strand 4
A
550 554anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
582 583anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
545 546anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
604 607anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 623first strand
Strand 2
A
626 629anti-parallel
Strand 3
A
674 677anti-parallel
Strand 4
A
666 668anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 655first strand
Strand 2
A
639 647anti-parallel
Strand 3
A
695 702anti-parallel
Strand 4
A
724 730anti-parallel
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