Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q8M entry

There are 8 chains in PDB entry 3Q8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2THR 336
B
 GLY 2SER 335
D
 A 1 T 18
E
 T 1 T 12
F
 A 1 C 7
G
 A 1 T 18
H
 T 1 T 12
I
 A 1 C 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3Q8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
22 27Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
61 77Right-handed alpha
Helix 5
5
A
90 92Right-handed 310
Helix 6
6
A
93 116Right-handed alpha
Helix 7
7
A
119 130Right-handed alpha
Helix 8
8
A
134 148Right-handed alpha
Helix 9
9
A
158 169Right-handed alpha
Helix 10
10
A
180 185Right-handed alpha
Helix 11
11
A
209 217Right-handed alpha
Helix 12
12
A
219 232Right-handed alpha
Helix 13
13
A
242 254Right-handed alpha
Helix 14
14
A
255 263Right-handed alpha
Helix 15
15
A
275 285Right-handed alpha
Helix 16
16
A
302 315Right-handed alpha
Helix 17
17
A
317 334Right-handed alpha
Helix 18
18
B
5 14Right-handed alpha
Helix 19
19
B
22 27Right-handed 310
Helix 20
20
B
35 46Right-handed alpha
Helix 21
21
B
61 77Right-handed alpha
Helix 22
22
B
90 92Right-handed 310
Helix 23
23
B
93 116Right-handed alpha
Helix 24
24
B
119 130Right-handed alpha
Helix 25
25
B
134 148Right-handed alpha
Helix 26
26
B
158 169Right-handed alpha
Helix 27
27
B
180 185Right-handed alpha
Helix 28
28
B
209 217Right-handed alpha
Helix 29
29
B
219 232Right-handed alpha
Helix 30
30
B
242 254Right-handed alpha
Helix 31
31
B
255 263Right-handed alpha
Helix 32
32
B
275 285Right-handed alpha
Helix 33
33
B
302 315Right-handed alpha
Helix 34
34
B
317 334Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3Q8M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
204 208anti-parallel
Strand 3
A
189 192anti-parallel
Strand 4
A
174 176parallel
Strand 5
A
30 34parallel
Strand 6
A
80 85parallel
Strand 7
A
152 154parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
204 208anti-parallel
Strand 3
B
189 192anti-parallel
Strand 4
B
174 176parallel
Strand 5
B
30 34parallel
Strand 6
B
80 85parallel
Strand 7
B
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
51 52anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il