Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q8N entry

There are 4 chains in PDB entry 3Q8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11VAL 448
B
 THR 11VAL 448
C
 THR 11LYS 449
D
 THR 11GLN 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3Q8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 38Right-handed alpha
Helix 2
2
A
70 75Right-handed alpha
Helix 3
3
A
82 96Right-handed alpha
Helix 4
4
A
106 120Right-handed alpha
Helix 5
5
A
133 150Right-handed alpha
Helix 6
6
A
165 172Right-handed alpha
Helix 7
7
A
196 201Right-handed alpha
Helix 8
8
A
204 220Right-handed alpha
Helix 9
9
A
221 223Right-handed 310
Helix 10
10
A
245 258Right-handed alpha
Helix 11
11
A
277 283Right-handed 310
Helix 12
12
A
292 297Right-handed 310
Helix 13
13
A
308 312Right-handed alpha
Helix 14
14
A
326 343Right-handed alpha
Helix 15
15
A
344 367Right-handed alpha
Helix 16
16
A
393 407Right-handed alpha
Helix 17
17
A
430 448Right-handed alpha
Helix 18
18
B
24 38Right-handed alpha
Helix 19
19
B
70 75Right-handed alpha
Helix 20
20
B
82 96Right-handed alpha
Helix 21
21
B
106 120Right-handed alpha
Helix 22
22
B
133 150Right-handed alpha
Helix 23
23
B
165 172Right-handed alpha
Helix 24
24
B
196 201Right-handed alpha
Helix 25
25
B
204 220Right-handed alpha
Helix 26
26
B
221 223Right-handed 310
Helix 27
27
B
245 258Right-handed alpha
Helix 28
28
B
277 283Right-handed 310
Helix 29
29
B
292 297Right-handed 310
Helix 30
30
B
308 312Right-handed alpha
Helix 31
31
B
326 343Right-handed alpha
Helix 32
32
B
344 367Right-handed alpha
Helix 33
33
B
393 407Right-handed alpha
Helix 34
34
B
430 448Right-handed alpha
Helix 35
35
C
24 38Right-handed alpha
Helix 36
36
C
70 75Right-handed alpha
Helix 37
37
C
82 96Right-handed alpha
Helix 38
38
C
106 120Right-handed alpha
Helix 39
39
C
133 150Right-handed alpha
Helix 40
40
C
165 172Right-handed alpha
Helix 41
41
C
196 201Right-handed alpha
Helix 42
42
C
204 220Right-handed alpha
Helix 43
43
C
221 223Right-handed 310
Helix 44
44
C
245 258Right-handed alpha
Helix 45
45
C
277 283Right-handed 310
Helix 46
46
C
292 297Right-handed 310
Helix 47
47
C
308 312Right-handed alpha
Helix 48
48
C
326 343Right-handed alpha
Helix 49
49
C
344 367Right-handed alpha
Helix 50
50
C
393 407Right-handed alpha
Helix 51
51
C
430 448Right-handed alpha
Helix 52
52
D
24 38Right-handed alpha
Helix 53
53
D
70 75Right-handed alpha
Helix 54
54
D
82 96Right-handed alpha
Helix 55
55
D
106 120Right-handed alpha
Helix 56
56
D
133 150Right-handed alpha
Helix 57
57
D
165 172Right-handed alpha
Helix 58
58
D
196 201Right-handed alpha
Helix 59
59
D
204 220Right-handed alpha
Helix 60
60
D
221 223Right-handed 310
Helix 61
61
D
245 258Right-handed alpha
Helix 62
62
D
277 283Right-handed 310
Helix 63
63
D
292 297Right-handed 310
Helix 64
64
D
308 312Right-handed alpha
Helix 65
65
D
326 343Right-handed alpha
Helix 66
66
D
344 367Right-handed alpha
Helix 67
67
D
393 407Right-handed alpha
Helix 68
68
D
430 448Right-handed alpha
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There are 12 sheets in PDB entry 3Q8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
65 68anti-parallel
Strand 4
A
409 410parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
260 264parallel
Strand 5
A
225 230parallel
Strand 6
A
153 157parallel
Strand 7
A
189 192parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
420 423anti-parallel
Strand 4
A
412 414anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
65 68anti-parallel
Strand 4
B
409 410parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 131first strand
Strand 2
B
302 307anti-parallel
Strand 3
B
288 291anti-parallel
Strand 4
B
260 264parallel
Strand 5
B
225 230parallel
Strand 6
B
153 157parallel
Strand 7
B
189 192parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 376first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
420 423anti-parallel
Strand 4
B
412 414anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
57 60anti-parallel
Strand 3
C
65 68anti-parallel
Strand 4
C
409 410parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 131first strand
Strand 2
C
302 307anti-parallel
Strand 3
C
288 291anti-parallel
Strand 4
C
260 264parallel
Strand 5
C
225 230parallel
Strand 6
C
153 157parallel
Strand 7
C
189 192parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
370 376first strand
Strand 2
C
379 384anti-parallel
Strand 3
C
420 423anti-parallel
Strand 4
C
412 414anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
57 60anti-parallel
Strand 3
D
65 68anti-parallel
Strand 4
D
409 410parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 131first strand
Strand 2
D
302 307anti-parallel
Strand 3
D
288 291anti-parallel
Strand 4
D
260 264parallel
Strand 5
D
225 230parallel
Strand 6
D
153 157parallel
Strand 7
D
189 192parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
370 376first strand
Strand 2
D
379 384anti-parallel
Strand 3
D
420 423anti-parallel
Strand 4
D
412 414anti-parallel
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