Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q98 entry

There is 1 chain in PDB entry 3Q98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3Q98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
26 30Right-handed 310
Helix 4
4
A
31 51Right-handed alpha
Helix 5
5
A
76 86Right-handed alpha
Helix 6
6
A
104 112Right-handed alpha
Helix 7
7
A
132 147Right-handed alpha
Helix 8
8
A
165 181Right-handed alpha
Helix 9
9
A
183 187Right-handed 310
Helix 10
10
A
205 216Right-handed alpha
Helix 11
11
A
217 219Right-handed 310
Helix 12
12
A
233 248Right-handed alpha
Helix 13
13
A
256 262Right-handed alpha
Helix 14
14
A
274 287Right-handed alpha
Helix 15
15
A
289 306Right-handed alpha
Helix 16
16
A
313 319Right-handed alpha
Helix 17
17
A
320 324Right-handed 310
Helix 18
18
A
347 363Right-handed alpha
Helix 19
19
A
363 377Right-handed alpha
Helix 20
20
A
379 391Right-handed alpha
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There are 3 sheets in PDB entry 3Q98. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
62 68parallel
Strand 3
A
116 123parallel
Strand 4
A
155 160parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
221 225parallel
Strand 3
A
190 194parallel
Strand 4
A
266 269parallel
Strand 5
A
326 327parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
345 346parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il