Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3Q9E entry

There are 12 chains in PDB entry 3Q9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 341
B	MET 1	GLY 341
C	MET 1	GLY 341
D	MET 1	GLY 341
E	MET 1	GLY 341
F	MET 1	GLY 341
G	MET 1	GLY 341
H	MET 1	GLY 341
I	MET 1	GLY 341
J	MET 1	GLY 341
K	MET 1	GLY 341
L	MET 1	GLY 341

There are152 helices in PDB entry 3Q9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	12	Right-handed 310
Helix 2	2	A	30	42	Right-handed alpha
Helix 3	3	A	58	62	Right-handed 310
Helix 4	4	A	64	81	Right-handed alpha
Helix 5	5	A	104	112	Right-handed alpha
Helix 6	6	A	123	144	Right-handed alpha
Helix 7	7	A	172	184	Right-handed alpha
Helix 8	8	A	199	207	Right-handed alpha
Helix 9	9	A	221	224	Right-handed 310
Helix 10	10	A	237	241	Right-handed 310
Helix 11	11	A	254	273	Right-handed alpha
Helix 12	12	A	299	310	Right-handed alpha
Helix 13	13	A	326	341	Right-handed alpha
Helix 14	14	B	7	12	Right-handed 310
Helix 15	15	B	30	43	Right-handed alpha
Helix 16	16	B	58	62	Right-handed 310
Helix 17	17	B	64	82	Right-handed alpha
Helix 18	18	B	104	112	Right-handed alpha
Helix 19	19	B	123	145	Right-handed alpha
Helix 20	20	B	172	184	Right-handed alpha
Helix 21	21	B	199	207	Right-handed alpha
Helix 22	22	B	221	224	Right-handed 310
Helix 23	23	B	237	241	Right-handed 310
Helix 24	24	B	254	273	Right-handed alpha
Helix 25	25	B	299	310	Right-handed alpha
Helix 26	26	B	326	341	Right-handed alpha
Helix 27	27	C	7	12	Right-handed 310
Helix 28	28	C	30	43	Right-handed alpha
Helix 29	29	C	58	62	Right-handed 310
Helix 30	30	C	64	81	Right-handed alpha
Helix 31	31	C	104	112	Right-handed alpha
Helix 32	32	C	123	145	Right-handed alpha
Helix 33	33	C	172	184	Right-handed alpha
Helix 34	34	C	199	207	Right-handed alpha
Helix 35	35	C	221	224	Right-handed 310
Helix 36	36	C	237	241	Right-handed 310
Helix 37	37	C	254	273	Right-handed alpha
Helix 38	38	C	298	310	Right-handed alpha
Helix 39	39	C	326	341	Right-handed alpha
Helix 40	40	D	7	12	Right-handed 310
Helix 41	41	D	30	43	Right-handed alpha
Helix 42	42	D	58	62	Right-handed 310
Helix 43	43	D	64	81	Right-handed alpha
Helix 44	44	D	104	112	Right-handed alpha
Helix 45	45	D	123	145	Right-handed alpha
Helix 46	46	D	172	184	Right-handed alpha
Helix 47	47	D	199	207	Right-handed alpha
Helix 48	48	D	221	224	Right-handed 310
Helix 49	49	D	237	241	Right-handed 310
Helix 50	50	D	255	273	Right-handed alpha
Helix 51	51	D	297	310	Right-handed alpha
Helix 52	52	D	327	341	Right-handed alpha
Helix 53	53	E	7	12	Right-handed 310
Helix 54	54	E	30	43	Right-handed alpha
Helix 55	55	E	58	62	Right-handed 310
Helix 56	56	E	64	81	Right-handed alpha
Helix 57	57	E	104	112	Right-handed alpha
Helix 58	58	E	123	144	Right-handed alpha
Helix 59	59	E	172	184	Right-handed alpha
Helix 60	60	E	199	207	Right-handed alpha
Helix 61	61	E	237	241	Right-handed 310
Helix 62	62	E	254	273	Right-handed alpha
Helix 63	63	E	299	310	Right-handed alpha
Helix 64	64	E	326	341	Right-handed alpha
Helix 65	65	F	6	12	Right-handed 310
Helix 66	66	F	30	43	Right-handed alpha
Helix 67	67	F	58	62	Right-handed 310
Helix 68	68	F	64	81	Right-handed alpha
Helix 69	69	F	104	112	Right-handed alpha
Helix 70	70	F	123	145	Right-handed alpha
Helix 71	71	F	172	184	Right-handed alpha
Helix 72	72	F	199	207	Right-handed alpha
Helix 73	73	F	237	241	Right-handed 310
Helix 74	74	F	255	273	Right-handed alpha
Helix 75	75	F	297	310	Right-handed alpha
Helix 76	76	F	327	341	Right-handed alpha
Helix 77	77	G	6	12	Right-handed 310
Helix 78	78	G	30	42	Right-handed alpha
Helix 79	79	G	58	62	Right-handed 310
Helix 80	80	G	64	81	Right-handed alpha
Helix 81	81	G	104	112	Right-handed alpha
Helix 82	82	G	123	144	Right-handed alpha
Helix 83	83	G	172	184	Right-handed alpha
Helix 84	84	G	199	207	Right-handed alpha
Helix 85	85	G	221	224	Right-handed 310
Helix 86	86	G	237	241	Right-handed 310
Helix 87	87	G	254	273	Right-handed alpha
Helix 88	88	G	297	310	Right-handed alpha
Helix 89	89	G	327	340	Right-handed alpha
Helix 90	90	H	7	12	Right-handed 310
Helix 91	91	H	30	43	Right-handed alpha
Helix 92	92	H	58	62	Right-handed 310
Helix 93	93	H	64	81	Right-handed alpha
Helix 94	94	H	104	112	Right-handed alpha
Helix 95	95	H	123	145	Right-handed alpha
Helix 96	96	H	172	184	Right-handed alpha
Helix 97	97	H	199	207	Right-handed alpha
Helix 98	98	H	221	224	Right-handed 310
Helix 99	99	H	237	241	Right-handed 310
Helix 100	100	H	255	273	Right-handed alpha
Helix 101	101	H	297	310	Right-handed alpha
Helix 102	102	H	326	341	Right-handed alpha
Helix 103	103	I	6	12	Right-handed 310
Helix 104	104	I	30	43	Right-handed alpha
Helix 105	105	I	58	62	Right-handed 310
Helix 106	106	I	64	82	Right-handed alpha
Helix 107	107	I	104	112	Right-handed alpha
Helix 108	108	I	123	144	Right-handed alpha
Helix 109	109	I	172	184	Right-handed alpha
Helix 110	110	I	199	207	Right-handed alpha
Helix 111	111	I	221	224	Right-handed 310
Helix 112	112	I	237	241	Right-handed 310
Helix 113	113	I	254	273	Right-handed alpha
Helix 114	114	I	299	310	Right-handed alpha
Helix 115	115	I	326	341	Right-handed alpha
Helix 116	116	J	6	12	Right-handed 310
Helix 117	117	J	30	43	Right-handed alpha
Helix 118	118	J	58	62	Right-handed 310
Helix 119	119	J	64	81	Right-handed alpha
Helix 120	120	J	104	112	Right-handed alpha
Helix 121	121	J	123	145	Right-handed alpha
Helix 122	122	J	172	184	Right-handed alpha
Helix 123	123	J	199	207	Right-handed alpha
Helix 124	124	J	221	224	Right-handed 310
Helix 125	125	J	237	241	Right-handed 310
Helix 126	126	J	254	273	Right-handed alpha
Helix 127	127	J	297	310	Right-handed alpha
Helix 128	128	J	326	341	Right-handed alpha
Helix 129	129	K	6	12	Right-handed 310
Helix 130	130	K	30	43	Right-handed alpha
Helix 131	131	K	58	62	Right-handed 310
Helix 132	132	K	64	81	Right-handed alpha
Helix 133	133	K	104	112	Right-handed alpha
Helix 134	134	K	123	144	Right-handed alpha
Helix 135	135	K	172	184	Right-handed alpha
Helix 136	136	K	199	207	Right-handed alpha
Helix 137	137	K	237	241	Right-handed 310
Helix 138	138	K	254	273	Right-handed alpha
Helix 139	139	K	297	310	Right-handed alpha
Helix 140	140	K	326	341	Right-handed alpha
Helix 141	141	L	7	12	Right-handed 310
Helix 142	142	L	30	43	Right-handed alpha
Helix 143	143	L	58	62	Right-handed 310
Helix 144	144	L	64	81	Right-handed alpha
Helix 145	145	L	104	112	Right-handed alpha
Helix 146	146	L	123	143	Right-handed alpha
Helix 147	147	L	172	185	Right-handed alpha
Helix 148	148	L	199	207	Right-handed alpha
Helix 149	149	L	237	241	Right-handed 310
Helix 150	150	L	255	273	Right-handed alpha
Helix 151	151	L	297	310	Right-handed alpha
Helix 152	152	L	327	341	Right-handed alpha

There are 28 sheets in PDB entry 3Q9E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	2	5	parallel
Strand 3	A	148	152	parallel
Strand 4	A	315	319	parallel
Strand 5	A	277	281	parallel
Strand 6	A	189	193	parallel
Strand 7	A	212	219	parallel
Strand 8	A	244	249	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	22	24	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	2	5	parallel
Strand 3	B	148	152	parallel
Strand 4	B	315	319	parallel
Strand 5	B	276	281	parallel
Strand 6	B	189	193	parallel
Strand 7	B	212	219	parallel
Strand 8	B	244	249	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	22	24	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	2	5	parallel
Strand 3	C	148	152	parallel
Strand 4	C	315	319	parallel
Strand 5	C	276	281	parallel
Strand 6	C	189	193	parallel
Strand 7	C	212	219	parallel
Strand 8	C	244	249	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	22	24	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	2	5	parallel
Strand 3	D	148	152	parallel
Strand 4	D	315	319	parallel
Strand 5	D	277	281	parallel
Strand 6	D	189	193	parallel
Strand 7	D	212	219	parallel
Strand 8	D	244	249	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	22	24	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	294	295	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	2	5	parallel
Strand 3	E	148	152	parallel
Strand 4	E	315	319	parallel
Strand 5	E	277	281	parallel
Strand 6	E	189	193	parallel
Strand 7	E	212	219	parallel
Strand 8	E	244	249	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	19	first strand
Strand 2	E	22	24	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	3	4	parallel
Strand 3	F	148	151	parallel
Strand 4	F	315	319	parallel
Strand 5	F	277	281	parallel
Strand 6	F	189	193	parallel
Strand 7	F	212	219	parallel
Strand 8	F	244	249	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	22	24	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	294	295	parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	2	4	parallel
Strand 3	G	148	151	parallel
Strand 4	G	315	319	parallel
Strand 5	G	277	281	parallel
Strand 6	G	189	193	parallel
Strand 7	G	212	219	parallel
Strand 8	G	244	249	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	19	first strand
Strand 2	G	22	24	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	2	5	parallel
Strand 3	H	148	152	parallel
Strand 4	H	315	319	parallel
Strand 5	H	276	281	parallel
Strand 6	H	189	193	parallel
Strand 7	H	212	219	parallel
Strand 8	H	244	249	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	22	24	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	253	254	first strand
Strand 2	H	294	295	parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	2	4	parallel
Strand 3	I	148	151	parallel
Strand 4	I	315	319	parallel
Strand 5	I	277	281	parallel
Strand 6	I	189	193	parallel
Strand 7	I	212	219	parallel
Strand 8	I	244	249	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	19	first strand
Strand 2	I	22	24	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	3	4	parallel
Strand 3	J	148	151	parallel
Strand 4	J	315	319	parallel
Strand 5	J	277	281	parallel
Strand 6	J	189	193	parallel
Strand 7	J	212	219	parallel
Strand 8	J	244	249	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	19	first strand
Strand 2	J	22	24	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	49	first strand
Strand 2	K	2	4	parallel
Strand 3	K	148	151	parallel
Strand 4	K	315	319	parallel
Strand 5	K	276	281	parallel
Strand 6	K	189	193	parallel
Strand 7	K	212	219	parallel
Strand 8	K	244	249	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	19	first strand
Strand 2	K	22	24	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	2	5	parallel
Strand 3	L	148	152	parallel
Strand 4	L	315	319	parallel
Strand 5	L	277	281	parallel
Strand 6	L	189	193	parallel
Strand 7	L	212	219	parallel
Strand 8	L	244	249	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	19	first strand
Strand 2	L	22	24	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	253	254	first strand
Strand 2	L	294	295	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3Q9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q9E