Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3Q9T entry

There are 3 chains in PDB entry 3Q9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	TYR 580
B	ALA 2	TYR 580
C	ALA 2	TYR 580

There are 77 helices in PDB entry 3Q9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	27	Right-handed alpha
Helix 2	2	A	43	46	Right-handed 310
Helix 3	3	A	47	52	Right-handed alpha
Helix 4	4	A	53	60	Right-handed 310
Helix 5	5	A	92	97	Right-handed 310
Helix 6	6	A	106	112	Right-handed alpha
Helix 7	7	A	113	118	Right-handed alpha
Helix 8	8	A	119	121	Right-handed 310
Helix 9	9	A	122	133	Right-handed alpha
Helix 10	10	A	144	151	Right-handed 310
Helix 11	11	A	164	166	Right-handed 310
Helix 12	12	A	167	181	Right-handed alpha
Helix 13	13	A	211	216	Right-handed 310
Helix 14	14	A	267	279	Right-handed alpha
Helix 15	15	A	283	289	Right-handed alpha
Helix 16	16	A	323	328	Right-handed alpha
Helix 17	17	A	331	345	Right-handed alpha
Helix 18	18	A	347	351	Right-handed 310
Helix 19	19	A	362	367	Right-handed alpha
Helix 20	20	A	369	379	Right-handed alpha
Helix 21	21	A	402	406	Right-handed 310
Helix 22	22	A	456	477	Right-handed alpha
Helix 23	23	A	479	482	Right-handed 310
Helix 24	24	A	496	508	Right-handed alpha
Helix 25	25	A	545	549	Right-handed 310
Helix 26	26	A	557	576	Right-handed alpha
Helix 27	27	B	16	27	Right-handed alpha
Helix 28	28	B	43	46	Right-handed 310
Helix 29	29	B	47	52	Right-handed alpha
Helix 30	30	B	53	60	Right-handed 310
Helix 31	31	B	92	97	Right-handed 310
Helix 32	32	B	106	112	Right-handed alpha
Helix 33	33	B	113	118	Right-handed alpha
Helix 34	34	B	119	121	Right-handed 310
Helix 35	35	B	122	132	Right-handed alpha
Helix 36	36	B	144	151	Right-handed 310
Helix 37	37	B	164	166	Right-handed 310
Helix 38	38	B	167	180	Right-handed alpha
Helix 39	39	B	211	216	Right-handed 310
Helix 40	40	B	267	279	Right-handed alpha
Helix 41	41	B	283	290	Right-handed alpha
Helix 42	42	B	323	328	Right-handed alpha
Helix 43	43	B	331	345	Right-handed alpha
Helix 44	44	B	347	351	Right-handed 310
Helix 45	45	B	362	368	Right-handed alpha
Helix 46	46	B	369	379	Right-handed alpha
Helix 47	47	B	402	406	Right-handed 310
Helix 48	48	B	456	476	Right-handed alpha
Helix 49	49	B	479	482	Right-handed 310
Helix 50	50	B	496	508	Right-handed alpha
Helix 51	51	B	545	549	Right-handed 310
Helix 52	52	B	557	576	Right-handed alpha
Helix 53	53	C	16	28	Right-handed alpha
Helix 54	54	C	43	46	Right-handed 310
Helix 55	55	C	47	52	Right-handed alpha
Helix 56	56	C	53	60	Right-handed 310
Helix 57	57	C	92	97	Right-handed 310
Helix 58	58	C	106	112	Right-handed alpha
Helix 59	59	C	113	118	Right-handed alpha
Helix 60	60	C	119	121	Right-handed 310
Helix 61	61	C	122	132	Right-handed alpha
Helix 62	62	C	144	151	Right-handed 310
Helix 63	63	C	167	181	Right-handed alpha
Helix 64	64	C	211	217	Right-handed 310
Helix 65	65	C	267	279	Right-handed alpha
Helix 66	66	C	283	290	Right-handed alpha
Helix 67	67	C	323	328	Right-handed alpha
Helix 68	68	C	331	345	Right-handed alpha
Helix 69	69	C	347	351	Right-handed 310
Helix 70	70	C	362	367	Right-handed alpha
Helix 71	71	C	369	379	Right-handed alpha
Helix 72	72	C	402	406	Right-handed 310
Helix 73	73	C	456	477	Right-handed alpha
Helix 74	74	C	479	482	Right-handed 310
Helix 75	75	C	496	508	Right-handed alpha
Helix 76	76	C	545	549	Right-handed 310
Helix 77	77	C	557	576	Right-handed alpha

There are 27 sheets in PDB entry 3Q9T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	34	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	254	265	parallel
Strand 5	A	241	249	anti-parallel
Strand 6	A	228	236	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	34	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	254	265	parallel
Strand 5	A	541	543	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	75	first strand
Strand 2	A	78	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	201	202	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	134	137	parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	393	398	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	309	317	anti-parallel
Strand 6	A	484	488	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	393	398	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	309	317	anti-parallel
Strand 6	A	509	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	296	297	parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	432	435	anti-parallel
Strand 3	A	448	450	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	34	37	parallel
Strand 3	B	7	13	parallel
Strand 4	B	254	265	parallel
Strand 5	B	241	248	anti-parallel
Strand 6	B	229	236	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	34	37	parallel
Strand 3	B	7	13	parallel
Strand 4	B	254	265	parallel
Strand 5	B	541	543	parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	75	first strand
Strand 2	B	78	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	201	202	anti-parallel
Strand 3	B	156	160	anti-parallel
Strand 4	B	134	137	parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	393	398	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	309	317	anti-parallel
Strand 6	B	484	488	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	393	398	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	309	317	anti-parallel
Strand 6	B	509	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	296	297	parallel

Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	305	first strand
Strand 2	B	432	435	anti-parallel
Strand 3	B	448	450	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	34	37	parallel
Strand 3	C	7	13	parallel
Strand 4	C	254	265	parallel
Strand 5	C	241	249	anti-parallel
Strand 6	C	228	236	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	34	37	parallel
Strand 3	C	7	13	parallel
Strand 4	C	254	265	parallel
Strand 5	C	541	543	parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	74	first strand
Strand 2	C	79	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	156	160	parallel
Strand 3	C	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	393	398	anti-parallel
Strand 4	C	416	424	anti-parallel
Strand 5	C	309	317	anti-parallel
Strand 6	C	484	488	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	393	398	anti-parallel
Strand 4	C	416	424	anti-parallel
Strand 5	C	309	317	anti-parallel
Strand 6	C	509	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	296	297	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	432	435	anti-parallel
Strand 3	C	448	450	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3Q9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q9T