Analysis of interatomic Contacts of Structural Units in PDB entry:
3QE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QE5 entry

There are 2 chains in PDB entry 3QE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1000SER 1486
B
 VAL 1000SER 1486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3QE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1059 1066Right-handed alpha
Helix 2
2
A
1076 1078Right-handed 310
Helix 3
3
A
1086 1095Right-handed alpha
Helix 4
4
A
1190 1194Right-handed 310
Helix 5
5
A
1199 1204Right-handed alpha
Helix 6
6
A
1245 1249Right-handed 310
Helix 7
7
A
1250 1260Right-handed alpha
Helix 8
8
A
1275 1283Right-handed alpha
Helix 9
9
A
1301 1306Right-handed alpha
Helix 10
10
A
1422 1424Right-handed 310
Helix 11
11
A
1442 1448Right-handed alpha
Helix 12
12
B
1059 1066Right-handed alpha
Helix 13
13
B
1086 1095Right-handed alpha
Helix 14
14
B
1190 1194Right-handed 310
Helix 15
15
B
1199 1204Right-handed alpha
Helix 16
16
B
1222 1225Right-handed 310
Helix 17
17
B
1245 1249Right-handed 310
Helix 18
18
B
1250 1261Right-handed alpha
Helix 19
19
B
1275 1283Right-handed alpha
Helix 20
20
B
1299 1306Right-handed alpha
Helix 21
21
B
1422 1424Right-handed 310
Helix 22
22
B
1442 1448Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3QE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1010first strand
Strand 2
A
1026 1033anti-parallel
Strand 3
A
1107 1112anti-parallel
Strand 4
A
1056 1058anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1075first strand
Strand 2
A
1080 1085anti-parallel
Strand 3
A
1046 1051anti-parallel
Strand 4
A
1124 1127anti-parallel
Strand 5
A
1131 1134anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1118 1121first strand
Strand 2
A
1138 1141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1164first strand
Strand 2
A
1181 1188anti-parallel
Strand 3
A
1290 1298anti-parallel
Strand 4
A
1218 1220anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1164first strand
Strand 2
A
1181 1188anti-parallel
Strand 3
A
1290 1298anti-parallel
Strand 4
A
1226 1229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1238 1243first strand
Strand 2
A
1268 1273anti-parallel
Strand 3
A
1207 1212anti-parallel
Strand 4
A
1307 1317anti-parallel
Strand 5
A
1320 1331anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1337 1341first strand
Strand 2
A
1362 1368anti-parallel
Strand 3
A
1457 1465anti-parallel
Strand 4
A
1394 1404anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1426 1431first strand
Strand 2
A
1436 1441anti-parallel
Strand 3
A
1383 1388anti-parallel
Strand 4
A
1474 1479anti-parallel
Strand 5
A
1482 1485anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1408 1409first strand
Strand 2
A
1415 1416anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1004 1010first strand
Strand 2
B
1026 1033anti-parallel
Strand 3
B
1107 1112anti-parallel
Strand 4
B
1056 1058anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1019 1020first strand
Strand 2
B
1138 1141parallel
Strand 3
B
1118 1121anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1075first strand
Strand 2
B
1080 1085anti-parallel
Strand 3
B
1046 1051anti-parallel
Strand 4
B
1124 1127anti-parallel
Strand 5
B
1131 1134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1160 1162first strand
Strand 2
B
1181 1188anti-parallel
Strand 3
B
1290 1298anti-parallel
Strand 4
B
1218 1220anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1160 1162first strand
Strand 2
B
1181 1188anti-parallel
Strand 3
B
1290 1298anti-parallel
Strand 4
B
1226 1229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1238 1243first strand
Strand 2
B
1268 1273anti-parallel
Strand 3
B
1207 1211anti-parallel
Strand 4
B
1307 1317anti-parallel
Strand 5
B
1320 1331anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1340 1341first strand
Strand 2
B
1362 1368anti-parallel
Strand 3
B
1457 1465anti-parallel
Strand 4
B
1394 1404anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1426 1431first strand
Strand 2
B
1436 1441anti-parallel
Strand 3
B
1383 1389anti-parallel
Strand 4
B
1473 1479anti-parallel
Strand 5
B
1482 1485anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1408 1409first strand
Strand 2
B
1415 1416anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il