Analysis of interatomic Contacts of Structural Units in PDB entry:
3QE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QE9 entry

There are 6 chains in PDB entry 3QE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 GLY 2ALA 346
C
 C 11 T 23
D
 T 1 G 10
Z
 GLY 2THR 345
A
 C 11 A 22
B
 T 1 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3QE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
Y
5 10Right-handed alpha
Helix 2
2
Y
20 23Right-handed 310
Helix 3
3
Y
31 42Right-handed alpha
Helix 4
4
Y
42 48Right-handed alpha
Helix 5
5
Y
53 69Right-handed alpha
Helix 6
6
Y
85 107Right-handed alpha
Helix 7
7
Y
112 120Right-handed alpha
Helix 8
8
Y
121 123Right-handed 310
Helix 9
9
Y
126 140Right-handed alpha
Helix 10
10
Y
150 161Right-handed alpha
Helix 11
11
Y
171 178Right-handed 310
Helix 12
12
Y
198 201Right-handed 310
Helix 13
13
Y
211 223Right-handed alpha
Helix 14
14
Y
234 245Right-handed alpha
Helix 15
15
Y
249 255Right-handed alpha
Helix 16
16
Y
256 262Right-handed alpha
Helix 17
17
Y
268 285Right-handed alpha
Helix 18
18
Y
306 310Right-handed 310
Helix 19
19
Y
318 327Right-handed alpha
Helix 20
20
Z
5 11Right-handed alpha
Helix 21
21
Z
20 23Right-handed 310
Helix 22
22
Z
31 41Right-handed alpha
Helix 23
23
Z
42 48Right-handed alpha
Helix 24
24
Z
53 68Right-handed alpha
Helix 25
25
Z
85 105Right-handed alpha
Helix 26
26
Z
114 121Right-handed alpha
Helix 27
27
Z
126 139Right-handed alpha
Helix 28
28
Z
150 161Right-handed alpha
Helix 29
29
Z
171 178Right-handed 310
Helix 30
30
Z
197 201Right-handed alpha
Helix 31
31
Z
211 223Right-handed alpha
Helix 32
32
Z
234 245Right-handed alpha
Helix 33
33
Z
249 256Right-handed alpha
Helix 34
34
Z
256 262Right-handed alpha
Helix 35
35
Z
268 285Right-handed alpha
Helix 36
36
Z
306 314Right-handed 310
Helix 37
37
Z
318 327Right-handed alpha
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There are 4 sheets in PDB entry 3QE9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
14 18first strand
Strand 2
Y
191 196anti-parallel
Strand 3
Y
181 184anti-parallel
Strand 4
Y
166 168parallel
Strand 5
Y
26 30parallel
Strand 6
Y
72 77parallel
Strand 7
Y
143 146parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
286 289first strand
Strand 2
Y
294 297anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
14 18first strand
Strand 2
Z
191 196anti-parallel
Strand 3
Z
181 184anti-parallel
Strand 4
Z
166 168parallel
Strand 5
Z
26 30parallel
Strand 6
Z
72 77parallel
Strand 7
Z
143 146parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
286 289first strand
Strand 2
Z
294 297anti-parallel
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