Analysis of interatomic Contacts of Structural Units in PDB entry:
3QEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QEE entry

There are 2 chains in PDB entry 3QEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29PRO 326
B
 GLN 28PRO 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3QEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 95Right-handed 310
Helix 2
2
A
153 157Right-handed 310
Helix 3
3
B
93 95Right-handed 310
Helix 4
4
B
153 157Right-handed 310
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There are 10 sheets in PDB entry 3QEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 47first strand
Strand 2
A
50 58anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
84 91anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 110first strand
Strand 2
A
113 122anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
144 145anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
200 206anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 222first strand
Strand 2
A
225 232anti-parallel
Strand 3
A
237 243anti-parallel
Strand 4
A
251 257anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
296 302anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 47first strand
Strand 2
B
50 58anti-parallel
Strand 3
B
69 77anti-parallel
Strand 4
B
84 91anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 110first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
129 136anti-parallel
Strand 4
B
143 145anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
179 183anti-parallel
Strand 3
B
189 193anti-parallel
Strand 4
B
200 206anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 222first strand
Strand 2
B
225 232anti-parallel
Strand 3
B
237 243anti-parallel
Strand 4
B
251 257anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 273first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
296 302anti-parallel
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