Analysis of interatomic Contacts of Structural Units in PDB entry:
3QFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QFP entry

There is 1 chain in PDB entry 3QFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 49LEU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3QFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 104Right-handed alpha
Helix 2
2
A
115 119Right-handed 310
Helix 3
3
A
126 133Right-handed alpha
Helix 4
4
A
161 182Right-handed alpha
Helix 5
5
A
197 211Right-handed alpha
Helix 6
6
A
221 229Right-handed alpha
Helix 7
7
A
274 288Right-handed alpha
Helix 8
8
A
301 319Right-handed alpha
Helix 9
9
A
344 357Right-handed alpha
Helix 10
10
A
358 369Right-handed alpha
Helix 11
11
A
372 376Right-handed 310
Helix 12
12
A
383 387Right-handed 310
Helix 13
13
A
388 399Right-handed alpha
Helix 14
14
A
412 424Right-handed alpha
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There are 6 sheets in PDB entry 3QFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
84 85anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
187 192parallel
Strand 5
A
214 220parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
112 113anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
156 160anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 270first strand
Strand 2
A
250 257anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
378 382parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 333first strand
Strand 2
A
336 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il