Analysis of interatomic Contacts of Structural Units in PDB entry:
3QI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3QI0 entry

There are 6 chains in PDB entry 3QI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 43	LYS 310
B	SER 43	LYS 310
C	THR 42	LYS 310
D	THR 42	LYS 310
E	THR 42	LYS 310
F	THR 42	ASP 106

There are 42 helices in PDB entry 3QI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	63	Right-handed 310
Helix 2	2	A	98	103	Right-handed 310
Helix 3	3	A	137	141	Right-handed 310
Helix 4	4	A	176	180	Right-handed 310
Helix 5	5	A	215	219	Right-handed 310
Helix 6	6	A	254	258	Right-handed 310
Helix 7	7	A	289	293	Right-handed 310
Helix 8	8	B	59	63	Right-handed 310
Helix 9	9	B	98	103	Right-handed 310
Helix 10	10	B	137	141	Right-handed 310
Helix 11	11	B	176	181	Right-handed 310
Helix 12	12	B	215	220	Right-handed 310
Helix 13	13	B	254	258	Right-handed 310
Helix 14	14	B	289	293	Right-handed 310
Helix 15	15	C	59	63	Right-handed 310
Helix 16	16	C	98	103	Right-handed 310
Helix 17	17	C	137	141	Right-handed 310
Helix 18	18	C	176	181	Right-handed 310
Helix 19	19	C	215	220	Right-handed 310
Helix 20	20	C	254	259	Right-handed 310
Helix 21	21	C	289	293	Right-handed 310
Helix 22	22	D	59	63	Right-handed 310
Helix 23	23	D	98	103	Right-handed 310
Helix 24	24	D	137	141	Right-handed 310
Helix 25	25	D	176	181	Right-handed 310
Helix 26	26	D	215	219	Right-handed 310
Helix 27	27	D	254	259	Right-handed 310
Helix 28	28	D	289	293	Right-handed 310
Helix 29	29	E	59	63	Right-handed 310
Helix 30	30	E	98	103	Right-handed 310
Helix 31	31	E	137	141	Right-handed 310
Helix 32	32	E	176	181	Right-handed 310
Helix 33	33	E	215	219	Right-handed 310
Helix 34	34	E	254	259	Right-handed 310
Helix 35	35	E	289	293	Right-handed 310
Helix 36	36	F	59	63	Right-handed 310
Helix 37	37	F	98	102	Right-handed 310
Helix 38	38	F	137	141	Right-handed 310
Helix 39	39	F	176	181	Right-handed 310
Helix 40	40	F	215	219	Right-handed 310
Helix 41	41	F	254	258	Right-handed 310
Helix 42	42	F	289	293	Right-handed 310

There are 42 sheets in PDB entry 3QI0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	298	301	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	83	88	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	114	119	anti-parallel
Strand 3	A	122	127	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	150	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	161	166	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	200	205	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	227	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	239	244	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	266	first strand
Strand 2	A	271	275	anti-parallel
Strand 3	A	278	282	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	306	309	anti-parallel
Strand 3	B	298	301	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	83	88	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	114	119	anti-parallel
Strand 3	B	122	127	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	150	first strand
Strand 2	B	153	158	anti-parallel
Strand 3	B	161	166	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	200	205	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	227	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	239	244	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	266	first strand
Strand 2	B	271	275	anti-parallel
Strand 3	B	278	282	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	298	301	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	83	88	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	114	119	anti-parallel
Strand 3	C	122	127	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	161	166	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	200	205	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	227	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	239	244	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	266	first strand
Strand 2	C	271	275	anti-parallel
Strand 3	C	278	282	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	306	309	anti-parallel
Strand 3	D	298	301	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	83	88	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	110	first strand
Strand 2	D	114	119	anti-parallel
Strand 3	D	122	127	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	153	158	anti-parallel
Strand 3	D	161	166	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	188	first strand
Strand 2	D	192	197	anti-parallel
Strand 3	D	200	205	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	231	236	anti-parallel
Strand 3	D	239	244	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	266	first strand
Strand 2	D	271	275	anti-parallel
Strand 3	D	278	282	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	306	310	anti-parallel
Strand 3	E	298	301	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	71	first strand
Strand 2	E	75	80	anti-parallel
Strand 3	E	83	88	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	110	first strand
Strand 2	E	114	119	anti-parallel
Strand 3	E	122	127	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	153	158	anti-parallel
Strand 3	E	161	166	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	188	first strand
Strand 2	E	192	197	anti-parallel
Strand 3	E	200	205	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	227	first strand
Strand 2	E	231	236	anti-parallel
Strand 3	E	239	244	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	266	first strand
Strand 2	E	271	275	anti-parallel
Strand 3	E	278	282	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	306	308	anti-parallel
Strand 3	F	299	301	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	71	first strand
Strand 2	F	75	80	anti-parallel
Strand 3	F	83	88	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	110	first strand
Strand 2	F	114	119	anti-parallel
Strand 3	F	122	127	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	149	first strand
Strand 2	F	153	158	anti-parallel
Strand 3	F	161	166	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	188	first strand
Strand 2	F	192	197	anti-parallel
Strand 3	F	200	205	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	227	first strand
Strand 2	F	231	236	anti-parallel
Strand 3	F	239	244	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	266	first strand
Strand 2	F	271	275	anti-parallel
Strand 3	F	278	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3QI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3QI0