Analysis of interatomic Contacts of Structural Units in PDB entry:
3QJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QJH entry

There are 4 chains in PDB entry 3QJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 206
B
 MET 2ASP 247
C
 ASP 1SER 206
D
 MET 2ALA 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3QJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
A
169 172Right-handed 310
Helix 3
3
A
188 193Right-handed alpha
Helix 4
4
B
58 64Right-handed alpha
Helix 5
5
B
83 87Right-handed 310
Helix 6
6
B
119 123Right-handed 310
Helix 7
7
B
134 142Right-handed alpha
Helix 8
8
B
201 205Right-handed alpha
Helix 9
9
C
81 85Right-handed 310
Helix 10
10
C
169 172Right-handed 310
Helix 11
11
C
188 193Right-handed alpha
Helix 12
12
D
58 64Right-handed alpha
Helix 13
13
D
83 87Right-handed 310
Helix 14
14
D
119 123Right-handed 310
Helix 15
15
D
134 142Right-handed alpha
Helix 16
16
D
201 205Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 3QJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
58 63anti-parallel
Strand 5
A
51 55anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
110 115anti-parallel
Strand 5
A
9 13parallel
Strand 6
C
9 13anti-parallel
Strand 7
C
110 115parallel
Strand 8
C
86 94anti-parallel
Strand 9
C
28 36anti-parallel
Strand 10
C
42 48anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
9 13parallel
Strand 5
C
9 13anti-parallel
Strand 6
C
110 115parallel
Strand 7
C
86 94anti-parallel
Strand 8
C
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
164 168anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
75 79anti-parallel
Strand 4
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
109 114parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
43 50anti-parallel
Strand 6
B
53 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
109 114parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
158 164anti-parallel
Strand 3
B
210 217anti-parallel
Strand 4
B
236 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
68 77anti-parallel
Strand 4
C
58 63anti-parallel
Strand 5
C
52 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 129first strand
Strand 2
C
137 142anti-parallel
Strand 3
C
173 182anti-parallel
Strand 4
C
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 129first strand
Strand 2
C
137 142anti-parallel
Strand 3
C
173 182anti-parallel
Strand 4
C
164 168anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
75 79anti-parallel
Strand 4
D
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
31 37anti-parallel
Strand 5
D
43 50anti-parallel
Strand 6
D
53 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 131first strand
Strand 2
D
143 153anti-parallel
Strand 3
D
191 200anti-parallel
Strand 4
D
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 131first strand
Strand 2
D
143 153anti-parallel
Strand 3
D
191 200anti-parallel
Strand 4
D
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 169first strand
Strand 2
D
158 164anti-parallel
Strand 3
D
210 217anti-parallel
Strand 4
D
236 243anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il