Analysis of interatomic Contacts of Structural Units in PDB entry:
3QJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QJO entry

There are 2 chains in PDB entry 3QJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2916ASP 3406
B
 ILE 2916ASP 3406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3QJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2926 2942Right-handed alpha
Helix 2
2
A
2948 2957Right-handed alpha
Helix 3
3
A
2979 2998Right-handed alpha
Helix 4
4
A
3017 3022Right-handed alpha
Helix 5
5
A
3060 3071Right-handed alpha
Helix 6
6
A
3074 3094Right-handed alpha
Helix 7
7
A
3102 3107Right-handed alpha
Helix 8
8
A
3109 3132Right-handed alpha
Helix 9
9
A
3162 3168Right-handed alpha
Helix 10
10
A
3170 3175Right-handed alpha
Helix 11
11
A
3176 3180Right-handed 310
Helix 12
12
A
3193 3205Right-handed alpha
Helix 13
13
A
3264 3272Right-handed alpha
Helix 14
14
A
3355 3360Right-handed alpha
Helix 15
15
A
3391 3395Right-handed 310
Helix 16
16
B
2926 2942Right-handed alpha
Helix 17
17
B
2948 2957Right-handed alpha
Helix 18
18
B
2979 2998Right-handed alpha
Helix 19
19
B
3017 3022Right-handed alpha
Helix 20
20
B
3060 3071Right-handed alpha
Helix 21
21
B
3074 3094Right-handed alpha
Helix 22
22
B
3102 3107Right-handed alpha
Helix 23
23
B
3109 3132Right-handed alpha
Helix 24
24
B
3162 3168Right-handed alpha
Helix 25
25
B
3170 3175Right-handed alpha
Helix 26
26
B
3176 3180Right-handed 310
Helix 27
27
B
3193 3205Right-handed alpha
Helix 28
28
B
3264 3272Right-handed alpha
Helix 29
29
B
3355 3360Right-handed alpha
Helix 30
30
B
3391 3395Right-handed 310
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There are 8 sheets in PDB entry 3QJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2918 2919first strand
Strand 2
A
3183 3184parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3209 3211first strand
Strand 2
A
3303 3305anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3239 3245first strand
Strand 2
A
3223 3228anti-parallel
Strand 3
A
3284 3287anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3314 3315first strand
Strand 2
A
3335 3336parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2918 2919first strand
Strand 2
B
3183 3184parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3209 3211first strand
Strand 2
B
3303 3305anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3239 3245first strand
Strand 2
B
3223 3228anti-parallel
Strand 3
B
3284 3287anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3314 3315first strand
Strand 2
B
3335 3336parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il