Analysis of interatomic Contacts of Structural Units in PDB entry:
3QLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QLH entry

There are 2 chains in PDB entry 3QLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 0ALA 554
B
GLU 6GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3QLH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
27 44Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
113 118Right-handed 310
Helix 5
5
A
121 129Right-handed 310
Helix 6
6
A
134 138Right-handed 310
Helix 7
7
A
155 175Right-handed alpha
Helix 8
8
A
194 211Right-handed alpha
Helix 9
9
A
253 268Right-handed alpha
Helix 10
10
A
276 281Right-handed alpha
Helix 11
11
A
282 284Right-handed 310
Helix 12
12
A
298 308Right-handed alpha
Helix 13
13
A
363 384Right-handed alpha
Helix 14
14
A
394 405Right-handed alpha
Helix 15
15
A
473 488Right-handed alpha
Helix 16
16
A
499 507Right-handed alpha
Helix 17
17
A
515 528Right-handed alpha
Helix 18
18
A
544 554Right-handed alpha
Helix 19
19
B
27 44Right-handed alpha
Helix 20
20
B
77 84Right-handed alpha
Helix 21
21
B
99 103Right-handed 310
Helix 22
22
B
112 118Right-handed 310
Helix 23
23
B
121 126Right-handed alpha
Helix 24
24
B
127 129Right-handed 310
Helix 25
25
B
134 138Right-handed 310
Helix 26
26
B
154 175Right-handed alpha
Helix 27
27
B
196 213Right-handed alpha
Helix 28
28
B
235 239Right-handed 310
Helix 29
29
B
254 268Right-handed alpha
Helix 30
30
B
276 281Right-handed alpha
Helix 31
31
B
296 312Right-handed alpha
Helix 32
32
B
363 384Right-handed alpha
Helix 33
33
B
394 402Right-handed alpha
Helix 34
34
B
403 405Right-handed 310
Helix 35
35
B
421 428Right-handed 310
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There are 12 sheets in PDB entry 3QLH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 64first strand
Strand 2
A
71 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
178 181anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 355first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
464 469first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
438 446anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
233 234anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
252 253first strand
Strand 2
B
292 293anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
348 353first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
414 416parallel
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