Analysis of interatomic Contacts of Structural Units in PDB entry:
3QM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3QM3 entry

There are 4 chains in PDB entry 3QM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	ASN 354
B	ALA 0	ASN 354
C	ALA 0	ASN 354
D	SER -2	ILE 255

There are123 helices in PDB entry 3QM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	6	Right-handed 310
Helix 2	2	A	13	15	Right-handed 310
Helix 3	3	A	16	28	Right-handed alpha
Helix 4	4	A	38	53	Right-handed alpha
Helix 5	5	A	61	70	Right-handed alpha
Helix 6	6	A	75	96	Right-handed alpha
Helix 7	7	A	107	109	Right-handed 310
Helix 8	8	A	110	129	Right-handed alpha
Helix 9	9	A	144	162	Right-handed alpha
Helix 10	10	A	193	205	Right-handed alpha
Helix 11	11	A	233	247	Right-handed alpha
Helix 12	12	A	266	276	Right-handed alpha
Helix 13	13	A	284	303	Right-handed alpha
Helix 14	14	A	304	306	Right-handed 310
Helix 15	15	A	320	325	Right-handed alpha
Helix 16	16	A	325	348	Right-handed alpha
Helix 17	17	B	2	6	Right-handed 310
Helix 18	18	B	13	28	Right-handed alpha
Helix 19	19	B	38	53	Right-handed alpha
Helix 20	20	B	61	70	Right-handed alpha
Helix 21	21	B	75	96	Right-handed alpha
Helix 22	22	B	107	109	Right-handed 310
Helix 23	23	B	110	129	Right-handed alpha
Helix 24	24	B	144	162	Right-handed alpha
Helix 25	25	B	193	206	Right-handed alpha
Helix 26	26	B	233	247	Right-handed alpha
Helix 27	27	B	266	276	Right-handed alpha
Helix 28	28	B	284	303	Right-handed alpha
Helix 29	29	B	304	306	Right-handed 310
Helix 30	30	B	320	325	Right-handed alpha
Helix 31	31	B	325	348	Right-handed alpha
Helix 32	32	C	2	7	Right-handed alpha
Helix 33	33	C	13	28	Right-handed alpha
Helix 34	34	C	38	53	Right-handed alpha
Helix 35	35	C	61	70	Right-handed alpha
Helix 36	36	C	75	96	Right-handed alpha
Helix 37	37	C	107	109	Right-handed 310
Helix 38	38	C	110	129	Right-handed alpha
Helix 39	39	C	144	163	Right-handed alpha
Helix 40	40	C	193	206	Right-handed alpha
Helix 41	41	C	233	247	Right-handed alpha
Helix 42	42	C	266	276	Right-handed alpha
Helix 43	43	C	284	303	Right-handed alpha
Helix 44	44	C	304	306	Right-handed 310
Helix 45	45	C	320	325	Right-handed alpha
Helix 46	46	C	325	348	Right-handed alpha
Helix 47	47	D	2	6	Right-handed 310
Helix 48	48	D	13	28	Right-handed alpha
Helix 49	49	D	38	53	Right-handed alpha
Helix 50	50	D	61	70	Right-handed alpha
Helix 51	51	D	75	96	Right-handed alpha
Helix 52	52	D	107	109	Right-handed 310
Helix 53	53	D	110	128	Right-handed alpha
Helix 54	54	D	144	161	Right-handed alpha
Helix 55	55	D	183	187	Right-handed 310
Helix 56	56	D	193	206	Right-handed alpha
Helix 57	57	D	233	248	Right-handed alpha
Helix 58	58	D	261	265	Right-handed 310
Helix 59	59	D	266	276	Right-handed alpha
Helix 60	60	D	284	303	Right-handed alpha
Helix 61	61	D	304	306	Right-handed 310
Helix 62	62	D	320	325	Right-handed alpha
Helix 63	63	D	325	348	Right-handed alpha
Helix 64	64	E	2	6	Right-handed 310
Helix 65	65	E	16	28	Right-handed alpha
Helix 66	66	E	38	53	Right-handed alpha
Helix 67	67	E	61	70	Right-handed alpha
Helix 68	68	E	75	96	Right-handed alpha
Helix 69	69	E	107	109	Right-handed 310
Helix 70	70	E	110	129	Right-handed alpha
Helix 71	71	E	144	162	Right-handed alpha
Helix 72	72	E	193	206	Right-handed alpha
Helix 73	73	E	233	248	Right-handed alpha
Helix 74	74	E	266	276	Right-handed alpha
Helix 75	75	E	284	303	Right-handed alpha
Helix 76	76	E	304	306	Right-handed 310
Helix 77	77	E	320	325	Right-handed alpha
Helix 78	78	E	325	348	Right-handed alpha
Helix 79	79	F	2	6	Right-handed 310
Helix 80	80	F	13	28	Right-handed alpha
Helix 81	81	F	38	53	Right-handed alpha
Helix 82	82	F	61	70	Right-handed alpha
Helix 83	83	F	75	96	Right-handed alpha
Helix 84	84	F	107	109	Right-handed 310
Helix 85	85	F	110	129	Right-handed alpha
Helix 86	86	F	144	162	Right-handed alpha
Helix 87	87	F	193	206	Right-handed alpha
Helix 88	88	F	233	247	Right-handed alpha
Helix 89	89	F	266	276	Right-handed alpha
Helix 90	90	F	284	303	Right-handed alpha
Helix 91	91	F	304	306	Right-handed 310
Helix 92	92	F	320	325	Right-handed alpha
Helix 93	93	F	325	348	Right-handed alpha
Helix 94	94	G	2	6	Right-handed 310
Helix 95	95	G	13	28	Right-handed alpha
Helix 96	96	G	38	53	Right-handed alpha
Helix 97	97	G	61	70	Right-handed alpha
Helix 98	98	G	75	96	Right-handed alpha
Helix 99	99	G	107	109	Right-handed 310
Helix 100	100	G	110	129	Right-handed alpha
Helix 101	101	G	144	162	Right-handed alpha
Helix 102	102	G	193	206	Right-handed alpha
Helix 103	103	G	233	247	Right-handed alpha
Helix 104	104	G	266	276	Right-handed alpha
Helix 105	105	G	284	303	Right-handed alpha
Helix 106	106	G	304	306	Right-handed 310
Helix 107	107	G	320	325	Right-handed alpha
Helix 108	108	G	325	348	Right-handed alpha
Helix 109	109	H	2	6	Right-handed 310
Helix 110	110	H	13	28	Right-handed alpha
Helix 111	111	H	38	53	Right-handed alpha
Helix 112	112	H	61	70	Right-handed alpha
Helix 113	113	H	75	96	Right-handed alpha
Helix 114	114	H	107	109	Right-handed 310
Helix 115	115	H	110	129	Right-handed alpha
Helix 116	116	H	144	162	Right-handed alpha
Helix 117	117	H	193	206	Right-handed alpha
Helix 118	118	H	233	247	Right-handed alpha
Helix 119	119	H	266	276	Right-handed alpha
Helix 120	120	H	284	303	Right-handed alpha
Helix 121	121	H	304	306	Right-handed 310
Helix 122	122	H	320	325	Right-handed alpha
Helix 123	123	H	325	348	Right-handed alpha

There are 20 sheets in PDB entry 3QM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	98	103	parallel
Strand 3	A	135	137	parallel
Strand 4	A	165	169	parallel
Strand 5	A	211	214	parallel
Strand 6	A	257	259	parallel
Strand 7	A	278	283	parallel
Strand 8	A	31	35	parallel
Strand 9	A	56	60	parallel
Strand 10	A	98	103	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	315	319	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	98	103	parallel
Strand 3	B	56	60	parallel
Strand 4	B	31	35	parallel
Strand 5	B	278	283	parallel
Strand 6	B	257	259	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	165	169	parallel
Strand 3	B	211	214	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	315	319	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	98	103	parallel
Strand 3	C	56	60	parallel
Strand 4	C	31	35	parallel
Strand 5	C	278	283	parallel
Strand 6	C	257	259	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	138	first strand
Strand 2	C	165	169	parallel
Strand 3	C	211	214	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	315	319	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	98	103	parallel
Strand 3	D	56	60	parallel
Strand 4	D	31	35	parallel
Strand 5	D	278	283	parallel
Strand 6	D	257	259	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	138	first strand
Strand 2	D	165	169	parallel
Strand 3	D	211	214	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	315	319	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	98	103	parallel
Strand 3	E	135	138	parallel
Strand 4	E	165	169	parallel
Strand 5	E	211	214	parallel
Strand 6	E	257	259	parallel
Strand 7	E	278	283	parallel
Strand 8	E	31	35	parallel
Strand 9	E	56	60	parallel
Strand 10	E	98	103	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	312	first strand
Strand 2	E	315	319	anti-parallel

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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	98	103	parallel
Strand 3	F	135	137	parallel
Strand 4	F	165	169	parallel
Strand 5	F	211	214	parallel
Strand 6	F	257	259	parallel
Strand 7	F	278	283	parallel
Strand 8	F	31	35	parallel
Strand 9	F	56	60	parallel
Strand 10	F	98	103	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	312	first strand
Strand 2	F	315	319	anti-parallel

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There are 10 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	98	103	parallel
Strand 3	G	135	138	parallel
Strand 4	G	165	169	parallel
Strand 5	G	211	214	parallel
Strand 6	G	257	259	parallel
Strand 7	G	278	283	parallel
Strand 8	G	31	35	parallel
Strand 9	G	56	60	parallel
Strand 10	G	98	103	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	312	first strand
Strand 2	G	315	319	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	98	103	parallel
Strand 3	H	56	60	parallel
Strand 4	H	31	35	parallel
Strand 5	H	278	283	parallel
Strand 6	H	257	259	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	138	first strand
Strand 2	H	165	169	parallel
Strand 3	H	211	214	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	310	312	first strand
Strand 2	H	315	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3QM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3QM3